Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.52□□□□□ -1.69
COL18A1P39060 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL18A1P39060 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC015802.5-201ENST00000607478 399 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC083843.3-201ENST00000623679 2186 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 AC092435.4-201ENST00000623012 4159 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL18A1P39060 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL18A1P39060 SNORA54-201ENST00000384281 123 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC093698.1-201ENST00000423843 571 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.51□□□□□ -1.69
COL18A1P39060 RPL7P48-201ENST00000461513 746 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.51□□□□□ -1.69
COL18A1P39060 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.51□□□□□ -1.69
COL18A1P39060 AC005798.1-201ENST00000513715 387 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.51□□□□□ -1.69
COL18A1P39060 AL121603.1-201ENST00000553815 142 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.51□□□□□ -1.69
COL18A1P39060 LARP7P3-201ENST00000579888 337 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC006504.3-201ENST00000586818 523 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.51□□□□□ -1.69
COL18A1P39060 AC020914.4-201ENST00000597690 277 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 AL162274.2-201ENST00000614406 332 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 ATP5A1P2-202ENST00000616464 443 ntBASIC4.51□□□□□ -1.69
COL18A1P39060 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
COL18A1P39060 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.51□□□□□ -1.69
COL18A1P39060 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.51□□□□□ -1.69
COL18A1P39060 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL18A1P39060 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.5□□□□□ -1.69
COL18A1P39060 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.5□□□□□ -1.69
COL18A1P39060 ATP5C1P1-201ENST00000441945 895 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 NPM1P17-201ENST00000479221 602 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AL121766.1-201ENST00000547436 487 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AL121594.4-201ENST00000556211 1196 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.5□□□□□ -1.69
COL18A1P39060 AC110801.1-201ENST00000623590 212 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
COL18A1P39060 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.5□□□□□ -1.69
COL18A1P39060 ZNF807-201ENST00000328088 1707 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL18A1P39060 ANKRD36P1-201ENST00000344424 659 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.5□□□□□ -1.69
COL18A1P39060 MTND4P22-201ENST00000413116 1169 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 MTND6P32-201ENST00000457611 483 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 RPS26P15-201ENST00000488067 348 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.5□□□□□ -1.69
COL18A1P39060 AC034105.3-201ENST00000565294 442 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AC107294.1-201ENST00000609524 467 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.5□□□□□ -1.69
COL18A1P39060 NMD3P1-201ENST00000439704 1488 ntBASIC4.5□□□□□ -1.69
COL18A1P39060 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 OTUD4P1-201ENST00000237841 3067 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.49□□□□□ -1.69
COL18A1P39060 MUC2-202ENST00000613187 4845 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.49□□□□□ -1.69
COL18A1P39060 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL18A1P39060 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
COL18A1P39060 NACA3P-201ENST00000359690 648 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 SNORA80A-201ENST00000363922 136 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 CCRL1P1-201ENST00000449542 1053 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 RPL21P8-201ENST00000465083 535 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 AC010653.1-201ENST00000571108 881 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.49□□□□□ -1.69
COL18A1P39060 SMG1P4-204ENST00000523028 4131 ntBASIC4.49□□□□□ -1.69
COL18A1P39060 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.49□□□□□ -1.69
COL18A1P39060 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
COL18A1P39060 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL18A1P39060 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
COL18A1P39060 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 MTND4LP20-201ENST00000402379 270 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 AL158071.1-201ENST00000430315 461 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.48□□□□□ -1.69
COL18A1P39060 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 RPL21P6-201ENST00000479171 504 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 BTF3L4P4-201ENST00000506381 449 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 AC018442.3-201ENST00000523025 183 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.48□□□□□ -1.69
COL18A1P39060 AC093732.2-201ENST00000607950 274 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms