Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MTND3P1-201ENST00000441336 220 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 ARL4AP3-201ENST00000441452 574 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 UBE2D3P4-201ENST00000441973 436 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.41□□□□□ -1.54
SMARCA1P28370 SCARNA10-201ENST00000459255 330 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AC018552.3-201ENST00000567416 561 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.41□□□□□ -1.54
SMARCA1P28370 BPTFP1-201ENST00000579209 492 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AC115085.1-201ENST00000588924 229 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AC106791.2-201ENST00000604680 391 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AL451074.6-201ENST00000608512 729 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AC023509.5-201ENST00000617434 807 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.41□□□□□ -1.54
SMARCA1P28370 AC015804.1-201ENST00000622935 435 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SMARCA1P28370 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SMARCA1P28370 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.41□□□□□ -1.54
SMARCA1P28370 ZNF542P-204ENST00000482727 1305 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 CASC19-204ENST00000641001 2055 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AC022031.1-201ENST00000585985 2593 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 AP000526.1-201ENST00000603308 1388 ntBASIC5.41□□□□□ -1.54
SMARCA1P28370 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SMARCA1P28370 AL731532.2-201ENST00000623542 1953 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.4□□□□□ -1.54
SMARCA1P28370 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.4□□□□□ -1.54
SMARCA1P28370 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
SMARCA1P28370 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SMARCA1P28370 OR56B2P-201ENST00000317102 954 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 RNU6-619P-201ENST00000365146 108 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 MIR192-201ENST00000384915 110 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 Z98745.1-201ENST00000402553 494 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 GSTA8P-201ENST00000404253 637 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 OR51A3P-201ENST00000413596 924 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AL139421.1-201ENST00000423010 169 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC234781.2-201ENST00000426370 994 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AL353597.2-202ENST00000434901 373 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 YWHAZP7-201ENST00000436906 631 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 USP9YP22-201ENST00000438971 294 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 THAP5P1-201ENST00000439089 262 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AC093155.1-201ENST00000440164 826 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 OR5BM1P-201ENST00000512021 366 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AC007016.1-201ENST00000512110 244 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AF186190.1-201ENST00000517470 480 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AP001317.1-201ENST00000531194 960 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC137768.1-201ENST00000549998 553 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.4□□□□□ -1.54
SMARCA1P28370 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.4□□□□□ -1.54
SMARCA1P28370 AC090312.2-201ENST00000582687 378 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 AC090246.1-201ENST00000616499 426 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 MIR8069-1-201ENST00000616627 86 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 MIR8069-2-201ENST00000621412 86 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 CDRT1-208ENST00000630868 794 ntBASIC5.4□□□□□ -1.54
SMARCA1P28370 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SMARCA1P28370 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.4□□□□□ -1.55
SMARCA1P28370 AC092162.3-201ENST00000624511 1624 ntBASIC5.4□□□□□ -1.55
SMARCA1P28370 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.4□□□□□ -1.55
SMARCA1P28370 MAPK10-286ENST00000641208 8747 ntBASIC5.4□□□□□ -1.55
SMARCA1P28370 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SMARCA1P28370 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AL355852.1-201ENST00000454081 1771 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 AL353743.4-201ENST00000422653 1547 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 Y_RNA.408-201ENST00000383987 102 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 RPS3AP23-201ENST00000401762 784 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 RPS4XP9-201ENST00000405151 780 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC019050.1-201ENST00000418508 492 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 USP9YP31-201ENST00000431405 881 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC118469.1-201ENST00000442943 488 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC011753.3-201ENST00000443436 406 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 MTND2P4-201ENST00000445034 1004 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.39□□□□□ -1.55
SMARCA1P28370 PTMAP3-201ENST00000447474 330 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms