Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 RNU6-28P-201ENST00000362378 107 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RN7SKP171-201ENST00000364417 303 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RNY1P14-201ENST00000384426 108 ntBASIC6.16□□□□□ -1.42
MSX1P28360 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 THEM7P-201ENST00000419556 672 ntBASIC6.16□□□□□ -1.42
MSX1P28360 TIMM9P1-201ENST00000436122 256 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.16□□□□□ -1.42
MSX1P28360 AC011742.2-201ENST00000443818 352 ntBASIC6.16□□□□□ -1.42
MSX1P28360 GAPDHP23-201ENST00000444823 993 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC073109.1-201ENST00000445066 978 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 AL118520.1-201ENST00000450770 291 ntBASIC6.16□□□□□ -1.42
MSX1P28360 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 RPL7AP10-201ENST00000481016 791 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RPL7AP23-201ENST00000482625 776 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC079140.5-201ENST00000507882 310 ntBASIC6.16□□□□□ -1.42
MSX1P28360 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RNU6-1213P-201ENST00000517075 94 ntBASIC6.16□□□□□ -1.42
MSX1P28360 SOD1P3-201ENST00000518682 454 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC090136.1-201ENST00000520009 240 ntBASIC6.16□□□□□ -1.42
MSX1P28360 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 AC140063.1-201ENST00000541343 259 ntBASIC6.16□□□□□ -1.42
MSX1P28360 MDM2-233ENST00000545204 398 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 LSM3P2-201ENST00000551246 273 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 AC106785.4-201ENST00000569492 412 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC113195.1-201ENST00000579952 141 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.16□□□□□ -1.42
MSX1P28360 AL512782.1-201ENST00000603093 364 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 MIR7854-201ENST00000620068 65 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC005858.3-201ENST00000624756 589 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AL669831.3-213ENST00000636676 183 ntBASIC6.16□□□□□ -1.42
MSX1P28360 MAPK10-357ENST00000641831 2858 ntBASIC6.16□□□□□ -1.42
MSX1P28360 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.16□□□□□ -1.42
MSX1P28360 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 AL121768.1-201ENST00000613917 2544 ntBASIC6.16□□□□□ -1.42
MSX1P28360 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
MSX1P28360 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 CDC27P3-201ENST00000635418 1910 ntBASIC6.15□□□□□ -1.42
MSX1P28360 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX1P28360 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX1P28360 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
MSX1P28360 RNU6-1029P-201ENST00000384109 107 ntBASIC6.15□□□□□ -1.42
MSX1P28360 Y_RNA.463-201ENST00000384271 102 ntBASIC6.15□□□□□ -1.42
MSX1P28360 SNORA7A-201ENST00000384765 139 ntBASIC6.15□□□□□ -1.42
MSX1P28360 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
MSX1P28360 RN7SKP235-201ENST00000410662 305 ntBASIC6.15□□□□□ -1.42
MSX1P28360 RNU4-6P-201ENST00000410804 122 ntBASIC6.15□□□□□ -1.42
MSX1P28360 BX323014.1-201ENST00000412876 237 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 RPL7P10-201ENST00000417407 739 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.15□□□□□ -1.42
MSX1P28360 AL139184.1-202ENST00000422303 222 ntBASIC6.15□□□□□ -1.42
MSX1P28360 DPH3P2-201ENST00000422618 250 ntBASIC6.15□□□□□ -1.42
MSX1P28360 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 MED13P1-201ENST00000428342 171 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 AL590128.1-201ENST00000433407 286 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms