Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNU1-87P-201ENST00000363727 170 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 RNA5SP399-201ENST00000364003 117 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 MIR3074-201ENST00000384885 81 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AC004022.2-201ENST00000413824 193 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 XKRYP4-201ENST00000414395 483 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 AL391219.1-201ENST00000422570 483 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 MTND2P11-201ENST00000423638 648 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 RSL24D1P6-201ENST00000426934 401 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 RPS6P12-201ENST00000432491 726 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC083863.1-201ENST00000438811 231 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 YWHAQP9-201ENST00000445891 512 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 MTND2P25-201ENST00000449028 610 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 XKRYP5-201ENST00000449659 483 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 RPS11P1-201ENST00000451072 473 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC025181.1-201ENST00000477507 416 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 OR5H4P-201ENST00000510851 923 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 SNORA31.9-201ENST00000516429 84 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC3.83□□□□□ -1.8
CLDN9O95484 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.83□□□□□ -1.8
CLDN9O95484 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 AC009452.1-201ENST00000640823 606 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 MFSD8-220ENST00000641243 1422 ntBASIC3.83□□□□□ -1.8
CLDN9O95484 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLDN9O95484 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.83□□□□□ -1.8
CLDN9O95484 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
CLDN9O95484 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLDN9O95484 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLDN9O95484 SNORA70.2-201ENST00000364506 135 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 HMGB1P10-201ENST00000395823 563 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 TAF9BP2-201ENST00000400856 499 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 MTATP6P31-201ENST00000406985 692 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 CYP4F29P-201ENST00000420685 446 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC115285.1-201ENST00000424879 736 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.82□□□□□ -1.8
CLDN9O95484 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 AL356276.2-201ENST00000435919 558 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 CABYRP1-201ENST00000465493 1045 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC010618.1-201ENST00000469924 477 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 AL132838.2-201ENST00000492041 314 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.82□□□□□ -1.8
CLDN9O95484 RN7SKP122-201ENST00000515923 296 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 MRPL49P2-201ENST00000521066 465 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.82□□□□□ -1.8
CLDN9O95484 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.82□□□□□ -1.8
CLDN9O95484 AC004825.2-201ENST00000616634 455 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AL645927.2-201ENST00000618350 349 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AL356490.1-201ENST00000623079 479 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC090617.9-201ENST00000623751 147 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 ATE1-AS1-202ENST00000636460 506 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 AC022893.2-201ENST00000564832 3296 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLDN9O95484 AL139811.1-201ENST00000424779 2299 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 ZNF90P1-201ENST00000480493 1951 ntBASIC3.82□□□□□ -1.8
CLDN9O95484 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.82□□□□□ -1.8
CLDN9O95484 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLDN9O95484 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
CLDN9O95484 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.81□□□□□ -1.8
CLDN9O95484 IQCB2P-201ENST00000401788 1633 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 CASC19-261ENST00000641853 1638 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 AC009951.1-201ENST00000623674 2614 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 AC100871.1-201ENST00000507871 1456 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 AP002001.2-201ENST00000529025 1469 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 RNA5SP130-201ENST00000364431 114 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLDN9O95484 AL353692.2-201ENST00000407054 335 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 MIR1303-201ENST00000408625 86 ntBASIC3.81□□□□□ -1.8
CLDN9O95484 RNU2-17P-201ENST00000410290 190 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms