Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC000367.1-201ENST00000452711 1766 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 ASNSP1-204ENST00000641977 1664 ntBASIC3.9□□□□□ -1.78
NKX3-1Q99801 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
NKX3-1Q99801 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.9□□□□□ -1.78
NKX3-1Q99801 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
NKX3-1Q99801 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC011155.1-201ENST00000316512 456 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 RNU4-68P-201ENST00000364314 141 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 OR52E6-202ENST00000379946 954 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 MIR659-201ENST00000384963 97 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL079342.2-201ENST00000403367 482 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 Y_RNA.625-201ENST00000411256 107 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 OR4K6P-201ENST00000416478 897 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 ATG4AP1-201ENST00000416893 538 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 RPS12P5-201ENST00000423449 371 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC009965.2-201ENST00000425328 970 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 USP9YP9-201ENST00000429406 715 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 RPL7P4-203ENST00000430239 730 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 RPL21P110-201ENST00000433345 446 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC092013.1-201ENST00000438795 332 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 VN1R25P-201ENST00000443385 738 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 HMGB3P6-201ENST00000444896 598 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC104306.1-201ENST00000449702 371 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 NDUFA12P1-201ENST00000455914 406 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC005410.1-202ENST00000460347 485 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 APOOP2-201ENST00000461561 539 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC010469.1-201ENST00000463864 576 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC006967.1-201ENST00000467608 589 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 MTND4LP2-201ENST00000502312 285 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC084024.2-201ENST00000503480 791 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 HMGB3P13-201ENST00000511263 607 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 RN7SKP276-201ENST00000516242 268 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 EEF1A1P37-201ENST00000522748 715 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL442163.2-201ENST00000553912 710 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC090312.2-201ENST00000582687 378 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
NKX3-1Q99801 PCNAP1-202ENST00000595299 752 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL512782.1-201ENST00000603093 364 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 AL035411.2-201ENST00000604022 421 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC140725.3-201ENST00000616193 880 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 AC006927.4-201ENST00000639187 543 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 ZNF663P-202ENST00000641770 1131 ntBASIC3.9□□□□□ -1.79
NKX3-1Q99801 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
NKX3-1Q99801 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
NKX3-1Q99801 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC099786.3-201ENST00000565735 1410 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC021146.4-201ENST00000309229 279 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 OR52B1P-201ENST00000316506 909 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 MIR513B-201ENST00000385136 84 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 ATP5F1P2-201ENST00000398143 760 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 MIR298-201ENST00000401212 88 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL136310.1-201ENST00000404926 654 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPS16P5-201ENST00000406501 404 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPL26P29-201ENST00000415623 438 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL356320.2-201ENST00000417263 507 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 PDSS1P1-201ENST00000422953 1114 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPS12P10-201ENST00000427031 377 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPL23AP25-201ENST00000430973 463 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPS20P1-201ENST00000434853 354 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC004865.1-201ENST00000442276 1003 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 RAB11AP1-201ENST00000442978 646 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms