Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 OLMALINC-203ENST00000641087 3779 ntBASIC4.96□□□□□ -1.61
CCDC140Q96MF4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 TEK-202ENST00000406359 3935 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 FTO-215ENST00000636491 1676 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC140Q96MF4 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL592429.1-201ENST00000403909 1473 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.22-201ENST00000362492 102 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 RNU6-989P-201ENST00000362756 107 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 SNORD16-201ENST00000362803 99 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 MIR558-201ENST00000384920 94 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 MIR551B-201ENST00000384984 96 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL122016.1-201ENST00000403365 367 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC128677.1-201ENST00000436016 442 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 SPRYD7P1-201ENST00000443861 570 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC073415.1-201ENST00000449240 153 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL445991.1-201ENST00000450381 475 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 RPS29P15-201ENST00000458329 171 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC006499.3-201ENST00000506077 748 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC106800.3-201ENST00000511389 308 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 RNU7-30P-201ENST00000516835 62 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 OR8L1P-201ENST00000534005 955 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC127381.1-201ENST00000555979 939 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL133153.1-201ENST00000557756 303 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC023968.1-201ENST00000560719 475 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 VN1R80P-201ENST00000597126 338 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL008723.3-201ENST00000608926 449 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC093388.1-201ENST00000609166 430 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC024255.1-201ENST00000614376 102 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC009248.2-201ENST00000619826 254 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC079684.1-201ENST00000621405 437 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC090617.10-201ENST00000624308 134 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 AC107027.3-201ENST00000565095 3473 ntBASIC4.96□□□□□ -1.62
CCDC140Q96MF4 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CCDC140Q96MF4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC011369.2-201ENST00000624423 1567 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 SNORA62.1-201ENST00000364287 154 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 FAT1P1-201ENST00000406588 507 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RNU6-516P-201ENST00000411381 104 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RIMKLBP2-201ENST00000424737 654 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms