Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC093591.2-201ENST00000565254 3843 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC017104.4-201ENST00000636283 1592 ntBASIC6.06□□□□□ -1.44
LIG3P49916 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 RNU1-85P-201ENST00000364127 164 ntBASIC6.06□□□□□ -1.44
LIG3P49916 RN7SKP128-201ENST00000364270 303 ntBASIC6.06□□□□□ -1.44
LIG3P49916 RNU6-1103P-201ENST00000384150 107 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC087752.1-201ENST00000391360 558 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 RPS3AP9-201ENST00000417027 792 ntBASIC6.06□□□□□ -1.44
LIG3P49916 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 RAD23BP1-201ENST00000421404 1227 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC079807.1-201ENST00000429993 481 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 RSU1P2-202ENST00000437884 485 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 AC016027.4-201ENST00000450866 277 ntBASIC6.06□□□□□ -1.44
LIG3P49916 MTND1P11-201ENST00000456661 876 ntBASIC6.06□□□□□ -1.44
LIG3P49916 MTCO3P2-201ENST00000457365 171 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 AC090142.1-201ENST00000465776 462 ntBASIC6.06□□□□□ -1.44
LIG3P49916 OR52A4P-201ENST00000472867 958 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC092865.4-201ENST00000477936 615 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 AC034159.1-201ENST00000513885 583 ntBASIC6.06□□□□□ -1.44
LIG3P49916 RNU2-46P-201ENST00000517038 113 ntBASIC6.06□□□□□ -1.44
LIG3P49916 RNA5SP230-201ENST00000517039 122 ntBASIC6.06□□□□□ -1.44
LIG3P49916 RNU6-1003P-201ENST00000517099 105 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 CASP1-212ENST00000531166 300 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 MAGOH2P-202ENST00000584384 429 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC060780.3-201ENST00000589464 80 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC006363.1-201ENST00000603806 463 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC6.06□□□□□ -1.44
LIG3P49916 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC6.06□□□□□ -1.44
LIG3P49916 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 AC129778.1-202ENST00000623812 261 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 AL591379.1-207ENST00000635982 261 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.06□□□□□ -1.44
LIG3P49916 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 AC097504.1-201ENST00000515103 2415 ntBASIC6.06□□□□□ -1.44
LIG3P49916 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 HSPA8P17-201ENST00000427029 1382 ntBASIC6.06□□□□□ -1.44
LIG3P49916 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.06□□□□□ -1.44
LIG3P49916 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIG3P49916 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIG3P49916 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIG3P49916 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIG3P49916 ZNF33BP1-201ENST00000452497 1834 ntBASIC6.05□□□□□ -1.44
LIG3P49916 GNG5P1-201ENST00000255500 204 ntBASIC6.05□□□□□ -1.44
LIG3P49916 RPL23AP57-201ENST00000332361 466 ntBASIC6.05□□□□□ -1.44
LIG3P49916 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
LIG3P49916 RNA5SP477-201ENST00000362639 119 ntBASIC6.05□□□□□ -1.44
LIG3P49916 RNU6-1085P-201ENST00000363576 107 ntBASIC6.05□□□□□ -1.44
LIG3P49916 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
LIG3P49916 RNU6-921P-201ENST00000384361 107 ntBASIC6.05□□□□□ -1.44
LIG3P49916 RNU6-1009P-201ENST00000390996 107 ntBASIC6.05□□□□□ -1.44
LIG3P49916 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIG3P49916 RNU6-195P-201ENST00000411352 109 ntBASIC6.05□□□□□ -1.44
LIG3P49916 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.05□□□□□ -1.44
LIG3P49916 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.05□□□□□ -1.44
LIG3P49916 AL445669.1-201ENST00000426743 755 ntBASIC6.05□□□□□ -1.44
LIG3P49916 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC6.05□□□□□ -1.44
LIG3P49916 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AC002486.1-201ENST00000435098 391 ntBASIC6.05□□□□□ -1.44
LIG3P49916 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AL445466.1-201ENST00000448432 357 ntBASIC6.05□□□□□ -1.44
LIG3P49916 RPL23AP60-201ENST00000450011 454 ntBASIC6.05□□□□□ -1.44
LIG3P49916 C1DP4-201ENST00000455429 424 ntBASIC6.05□□□□□ -1.44
LIG3P49916 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.05□□□□□ -1.44
LIG3P49916 RNU6-1218P-201ENST00000458990 108 ntBASIC6.05□□□□□ -1.44
LIG3P49916 RBM43P1-201ENST00000476891 1081 ntBASIC6.05□□□□□ -1.44
LIG3P49916 AC013356.1-201ENST00000489027 564 ntBASIC6.05□□□□□ -1.44
LIG3P49916 AC006390.1-201ENST00000508068 283 ntBASIC6.05□□□□□ -1.44
LIG3P49916 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC6.05□□□□□ -1.44
LIG3P49916 AC025465.4-201ENST00000513422 638 ntBASIC6.05□□□□□ -1.44
LIG3P49916 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC6.05□□□□□ -1.44
LIG3P49916 AP003122.4-201ENST00000530980 758 ntBASIC6.05□□□□□ -1.44
LIG3P49916 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AL512310.1-201ENST00000548639 172 ntBASIC6.05□□□□□ -1.44
LIG3P49916 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC6.05□□□□□ -1.44
LIG3P49916 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms