Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC024341.1-201ENST00000526444 1552 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL18A1P39060 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL18A1P39060 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.55□□□□□ -1.68
COL18A1P39060 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
COL18A1P39060 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.55□□□□□ -1.68
COL18A1P39060 AC068254.2-201ENST00000623938 3577 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL18A1P39060 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.55□□□□□ -1.68
COL18A1P39060 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.55□□□□□ -1.68
COL18A1P39060 RN7SKP97-201ENST00000410966 333 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.55□□□□□ -1.68
COL18A1P39060 AL353705.1-201ENST00000433468 480 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.55□□□□□ -1.68
COL18A1P39060 AC023141.12-201ENST00000512399 199 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.55□□□□□ -1.68
COL18A1P39060 AC092747.2-201ENST00000545069 983 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.55□□□□□ -1.68
COL18A1P39060 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.55□□□□□ -1.68
COL18A1P39060 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.55□□□□□ -1.68
COL18A1P39060 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL18A1P39060 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL18A1P39060 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.54□□□□□ -1.68
COL18A1P39060 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.54□□□□□ -1.68
COL18A1P39060 Z83843.1-201ENST00000604070 3685 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL18A1P39060 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL18A1P39060 RNU1-18P-201ENST00000363062 164 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 AC093719.1-202ENST00000392735 373 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 AL603766.1-201ENST00000407763 664 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RNA5SP229-201ENST00000410809 99 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 HMGN1P24-201ENST00000412282 298 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RNF19BPX-201ENST00000426224 625 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RPS29P31-201ENST00000446147 164 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RN7SL429P-201ENST00000479090 223 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RN7SL489P-201ENST00000486185 223 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RN7SL327P-201ENST00000488659 223 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.54□□□□□ -1.68
COL18A1P39060 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.54□□□□□ -1.68
COL18A1P39060 BNIP3P41-202ENST00000616656 861 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 RN7SL853P-201ENST00000617250 223 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 AC099654.11-201ENST00000638857 294 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 FAM35BP-202ENST00000497389 3337 ntBASIC4.54□□□□□ -1.68
COL18A1P39060 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL18A1P39060 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL18A1P39060 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 SNORA44-201ENST00000384584 132 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.53□□□□□ -1.68
COL18A1P39060 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.53□□□□□ -1.68
COL18A1P39060 RPL12P46-201ENST00000436610 195 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AC025750.2-201ENST00000442609 450 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AC112198.1-201ENST00000505369 1220 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.53□□□□□ -1.68
COL18A1P39060 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.53□□□□□ -1.68
COL18A1P39060 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 AC092868.3-201ENST00000560515 784 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 AC008638.3-201ENST00000603341 463 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AL353600.1-201ENST00000608148 251 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 RNVU1-4-201ENST00000612985 164 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 AC138627.1-204ENST00000641894 765 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 AL732372.2-225ENST00000642124 456 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
COL18A1P39060 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.53□□□□□ -1.68
COL18A1P39060 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 HSPA8P19-201ENST00000505359 1517 ntBASIC4.53□□□□□ -1.68
COL18A1P39060 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.53□□□□□ -1.68
COL18A1P39060 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL18A1P39060 RNU1-70P-201ENST00000362618 164 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 TAF9BP1-201ENST00000396646 746 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.53□□□□□ -1.69
COL18A1P39060 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.53□□□□□ -1.69
COL18A1P39060 RPL23AP69-201ENST00000431134 458 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.53□□□□□ -1.69
COL18A1P39060 RPL27AP5-201ENST00000469428 449 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.53□□□□□ -1.69
COL18A1P39060 CR383656.14-201ENST00000551951 406 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.53□□□□□ -1.69
COL18A1P39060 AP003392.5-201ENST00000607857 415 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 AL157762.1-201ENST00000619612 415 ntBASIC4.53□□□□□ -1.69
COL18A1P39060 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL18A1P39060 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.52□□□□□ -1.69
COL18A1P39060 TNPO1P3-201ENST00000436471 2662 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.52□□□□□ -1.69
COL18A1P39060 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.52□□□□□ -1.69
COL18A1P39060 HMGB3P22-202ENST00000451823 572 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 RPS27AP1-201ENST00000475545 471 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 AC139783.2-201ENST00000504847 1145 ntBASIC4.52□□□□□ -1.69
COL18A1P39060 AC021678.1-201ENST00000505195 936 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms