Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA9P31269 AC007424.1-203ENST00000554613 687 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 OR1AB1P-201ENST00000585564 761 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 AC007423.1-201ENST00000605009 627 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA9P31269 AC012314.7-201ENST00000619693 93 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 AC015967.1-201ENST00000619893 476 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 RMST_9.1-201ENST00000619945 193 ntBASIC4.07□□□□□ -1.76
HOXA9P31269 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA9P31269 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA9P31269 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA9P31269 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA9P31269 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA9P31269 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA9P31269 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 RNU6-761P-201ENST00000384148 107 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA9P31269 RPS20P25-201ENST00000412447 352 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 OR4F13P-201ENST00000428478 931 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 NANOGP6-201ENST00000429190 847 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 ELOCP18-201ENST00000434209 337 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 RPL23AP83-201ENST00000434984 473 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA9P31269 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 OR6C72P-201ENST00000451403 892 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 RNU6-1218P-201ENST00000458990 108 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 RPL21P71-201ENST00000465598 459 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 MTND3P6-201ENST00000485242 339 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 AC139783.2-201ENST00000504847 1145 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA9P31269 HNRNPKP5-201ENST00000515300 253 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA9P31269 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 OR4A12P-201ENST00000530847 918 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA9P31269 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA9P31269 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 AC025946.2-201ENST00000603398 234 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 AC074276.2-201ENST00000619891 348 ntBASIC4.06□□□□□ -1.76
HOXA9P31269 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA9P31269 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA9P31269 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA9P31269 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA9P31269 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA9P31269 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
HOXA9P31269 AC087190.4-201ENST00000574616 8334 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 Y_RNA.333-201ENST00000365274 102 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 RNU2-65P-201ENST00000410162 185 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA9P31269 CYP4F29P-201ENST00000420685 446 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA9P31269 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA9P31269 HMGB1P37-201ENST00000439613 609 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA9P31269 AC239809.1-201ENST00000450470 217 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.05□□□□□ -1.76
HOXA9P31269 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA9P31269 RPL7P49-201ENST00000471402 708 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC092045.1-201ENST00000495716 1231 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA9P31269 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA9P31269 IGHV3-63-201ENST00000518422 341 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC007991.1-201ENST00000522680 631 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 GTF2IP22-201ENST00000554443 182 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 MIR4458-201ENST00000578872 75 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 MIR4512-201ENST00000583257 77 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC092354.2-201ENST00000607786 514 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
HOXA9P31269 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
HOXA9P31269 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA9P31269 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC095050.2-201ENST00000510748 1458 ntBASIC4.05□□□□□ -1.76
HOXA9P31269 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA9P31269 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA9P31269 AC090229.1-201ENST00000590983 1609 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXA9P31269 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA9P31269 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.04□□□□□ -1.76
HOXA9P31269 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms