Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNA5SP515-201ENST00000364570 118 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 RNA5SP366-201ENST00000365454 123 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTPN4P29074 SNORA57.1-201ENST00000391227 145 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 RPS20P14-201ENST00000412545 360 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.2□□□□□ -1.74
PTPN4P29074 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
PTPN4P29074 AL357078.2-201ENST00000416486 427 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 LINC01347-201ENST00000417964 355 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 MTND2P15-201ENST00000418575 892 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.2□□□□□ -1.74
PTPN4P29074 MTCO3P4-201ENST00000419236 787 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 USP12PY-201ENST00000427677 1064 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.2□□□□□ -1.74
PTPN4P29074 AC011742.1-201ENST00000431448 434 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 RPS3AP54-201ENST00000435535 734 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC020898.1-201ENST00000474167 787 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.2□□□□□ -1.74
PTPN4P29074 AC091167.1-201ENST00000492017 396 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.2□□□□□ -1.74
PTPN4P29074 MIR2116-201ENST00000517221 80 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.2□□□□□ -1.74
PTPN4P29074 CIR1P1-201ENST00000524055 1133 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 CYCSP29-201ENST00000533731 318 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.2□□□□□ -1.74
PTPN4P29074 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.2□□□□□ -1.74
PTPN4P29074 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
PTPN4P29074 AC010680.4-201ENST00000605334 543 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 MIR486-1-201ENST00000612171 68 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 AC245389.2-201ENST00000616023 576 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.2□□□□□ -1.74
PTPN4P29074 AC242843.1-201ENST00000618702 573 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 MIR3653-201ENST00000625572 110 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 FRG1DP-201ENST00000635586 771 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.2□□□□□ -1.74
PTPN4P29074 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.2□□□□□ -1.74
PTPN4P29074 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTPN4P29074 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTPN4P29074 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.2□□□□□ -1.74
PTPN4P29074 BDP1P-201ENST00000582658 1990 ntBASIC4.2□□□□□ -1.74
PTPN4P29074 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.19□□□□□ -1.74
PTPN4P29074 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.19□□□□□ -1.74
PTPN4P29074 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
PTPN4P29074 SNORA37-201ENST00000384504 129 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.19□□□□□ -1.74
PTPN4P29074 TCEA1P4-201ENST00000415066 844 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 AL121882.1-201ENST00000422893 417 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 ELOCP6-201ENST00000429066 328 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC023347.2-201ENST00000433994 462 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.19□□□□□ -1.74
PTPN4P29074 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 TPTE2P6-202ENST00000445572 1007 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC114755.5-201ENST00000447760 831 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.19□□□□□ -1.74
PTPN4P29074 DHFRP3-201ENST00000455595 559 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 ELOCP12-201ENST00000458706 328 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 RPL7P19-201ENST00000469948 618 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.19□□□□□ -1.74
PTPN4P29074 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.19□□□□□ -1.74
PTPN4P29074 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 AP003730.1-201ENST00000524605 285 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTPN4P29074 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 AL352979.3-201ENST00000553515 247 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.19□□□□□ -1.74
PTPN4P29074 AP003117.1-201ENST00000602771 554 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC083899.3-201ENST00000603413 594 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC113403.1-201ENST00000604910 193 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AP003392.5-201ENST00000607857 415 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC099669.2-201ENST00000616549 437 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 uc_338.13-201ENST00000618243 179 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AC083865.1-201ENST00000636634 831 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 EIF2AP4-201ENST00000424793 1781 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.19□□□□□ -1.74
PTPN4P29074 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.19□□□□□ -1.74
PTPN4P29074 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 OR11H5P-202ENST00000641612 1325 ntBASIC4.19□□□□□ -1.74
PTPN4P29074 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
PTPN4P29074 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.18□□□□□ -1.74
PTPN4P29074 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PTPN4P29074 AC005261.4-201ENST00000600047 1385 ntBASIC4.18□□□□□ -1.74
PTPN4P29074 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.18□□□□□ -1.74
PTPN4P29074 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PTPN4P29074 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
PTPN4P29074 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PTPN4P29074 AL121657.1-201ENST00000327215 531 ntBASIC4.18□□□□□ -1.74
PTPN4P29074 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.18□□□□□ -1.74
PTPN4P29074 MIR124-3-201ENST00000384866 87 ntBASIC4.18□□□□□ -1.74
PTPN4P29074 RNA5SP239-201ENST00000410218 129 ntBASIC4.18□□□□□ -1.74
PTPN4P29074 SNRPFP1-201ENST00000414761 252 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms