Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC243829.7-201ENST00000633081 225 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
COL6A3P12111 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 Y_RNA.164-201ENST00000363709 102 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 RPL7AP73-201ENST00000413490 353 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AL591806.2-201ENST00000433122 173 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 NECAP1P2-201ENST00000455668 727 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.57□□□□□ -1.84
COL6A3P12111 AC023161.2-201ENST00000551218 780 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC022106.2-201ENST00000620114 757 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 NPM1P37-201ENST00000403105 874 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 VDAC1P9-201ENST00000412766 841 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AL353705.1-201ENST00000433468 480 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC092447.2-201ENST00000435487 669 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 AC021205.1-201ENST00000468797 348 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.56□□□□□ -1.84
COL6A3P12111 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL6A3P12111 AL359219.2-201ENST00000555184 348 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL6A3P12111 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 PHACTR2P1-201ENST00000605639 1414 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 MIR489-201ENST00000384923 84 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 MTCO1P39-201ENST00000426148 480 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.56□□□□□ -1.84
COL6A3P12111 PPP1R11P1-201ENST00000486095 376 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC108210.2-201ENST00000503681 201 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC021678.1-201ENST00000505195 936 ntBASIC3.56□□□□□ -1.84
COL6A3P12111 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.56□□□□□ -1.84
COL6A3P12111 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A3P12111 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A3P12111 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 RPS21P8-201ENST00000413365 247 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 WASF1P1-201ENST00000447560 1131 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 EEF1B2P7-201ENST00000451177 676 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 AP002404.1-201ENST00000532005 451 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 H3F3AP1-201ENST00000559984 334 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 AL158827.2-201ENST00000602494 330 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 AL691447.3-201ENST00000635020 330 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.55□□□□□ -1.84
COL6A3P12111 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.55□□□□□ -1.84
COL6A3P12111 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
COL6A3P12111 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 AL672167.1-206ENST00000356293 943 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 RNU1-18P-201ENST00000363062 164 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 SNORA9.2-201ENST00000365361 133 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 SDCBPP2-201ENST00000424643 885 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 RPSAP41-201ENST00000439695 860 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 AC008011.1-201ENST00000545989 227 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.55□□□□□ -1.84
COL6A3P12111 AC004832.5-201ENST00000608677 401 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 MIR7702-201ENST00000621931 59 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.55□□□□□ -1.84
COL6A3P12111 AF117829.1-206ENST00000621883 3802 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
COL6A3P12111 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A3P12111 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 AC110794.1-201ENST00000505816 425 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 HIGD1AP1-201ENST00000550979 275 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms