Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AL049844.2-201ENST00000604280 628 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC112503.1-201ENST00000608436 391 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC011472.4-201ENST00000615848 491 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC078880.5-201ENST00000617845 421 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AP003497.2-201ENST00000624220 967 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC008785.1-201ENST00000624475 456 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 RNA5SP196-201ENST00000625967 102 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC140479.6-201ENST00000633535 357 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 MIR492-201ENST00000638676 116 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXD4P09016 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD4P09016 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD4P09016 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 AC105074.1-201ENST00000623380 3095 ntBASIC3.96□□□□□ -1.77
HOXD4P09016 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
HOXD4P09016 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
HOXD4P09016 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD4P09016 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXD4P09016 RNU6-603P-201ENST00000411403 107 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AMD1P2-201ENST00000412936 992 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD4P09016 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD4P09016 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD4P09016 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD4P09016 ELOCP18-201ENST00000434209 337 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 HLA-N-201ENST00000437516 135 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD4P09016 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD4P09016 AL512326.1-201ENST00000443050 721 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 DHFRP3-201ENST00000455595 559 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 RPS7P7-201ENST00000463499 571 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD4P09016 AC104982.1-201ENST00000478775 574 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC012158.1-204ENST00000483430 465 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 RPS27AP16-201ENST00000492222 470 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD4P09016 PRELID3BP6-201ENST00000503839 571 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 AC133963.2-201ENST00000513686 578 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD4P09016 MIR2114-201ENST00000516645 80 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD4P09016 IFITM8P-201ENST00000522529 394 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD4P09016 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD4P09016 AC018552.3-201ENST00000567416 561 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC011492.1-201ENST00000600023 315 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 AC084824.4-201ENST00000620106 731 ntBASIC3.96□□□□□ -1.78
HOXD4P09016 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD4P09016 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD4P09016 AC008432.1-201ENST00000615912 1320 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC106754.1-201ENST00000562632 1513 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 ASNSP1-201ENST00000518311 1939 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC005261.4-201ENST00000600047 1385 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RNU1-130P-201ENST00000363930 160 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD4P09016 VN1R8P-201ENST00000407739 893 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RNU2-17P-201ENST00000410290 190 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RNU6-584P-201ENST00000410350 95 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RPL36AP36-201ENST00000418616 301 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 EIF1P3-201ENST00000423841 334 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD4P09016 AC114973.1-201ENST00000429057 632 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD4P09016 Z80107.1-201ENST00000436830 412 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD4P09016 HSFY6P-201ENST00000445573 403 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXD4P09016 HMGB1P5-202ENST00000451497 985 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RPS27AP17-201ENST00000463344 455 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RPL21P18-201ENST00000469899 480 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RPL23AP71-201ENST00000470966 469 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 RPL35P6-201ENST00000490024 372 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC106872.2-201ENST00000494303 480 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC005912.1-201ENST00000495392 255 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD4P09016 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD4P09016 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD4P09016 HIGD1AP18-201ENST00000520730 278 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AC090819.1-201ENST00000523800 1111 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 MED28P5-201ENST00000528254 438 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 AP000916.1-201ENST00000533869 835 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
HOXD4P09016 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD4P09016 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD4P09016 AL049870.4-201ENST00000555741 486 ntBASIC3.95□□□□□ -1.78
HOXD4P09016 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms