Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC018754.1-201ENST00000607486 925 ntBASIC4.42□□□□□ -1.7
VMP1Q96GC9 OR7A19P-201ENST00000608051 733 ntBASIC4.42□□□□□ -1.7
VMP1Q96GC9 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.42□□□□□ -1.7
VMP1Q96GC9 MIR6820-201ENST00000611508 62 ntBASIC4.42□□□□□ -1.7
VMP1Q96GC9 MIR6780A-201ENST00000615089 68 ntBASIC4.42□□□□□ -1.7
VMP1Q96GC9 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VMP1Q96GC9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VMP1Q96GC9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VMP1Q96GC9 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VMP1Q96GC9 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL136164.3-201ENST00000624429 3978 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC090337.1-201ENST00000579651 2074 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL590240.1-201ENST00000334118 313 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 RNA5SP52-201ENST00000362448 134 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 MIR93-201ENST00000385024 80 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 RNU2-37P-201ENST00000410695 177 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 USP9YP19-201ENST00000412165 485 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 MTND4P22-201ENST00000413116 1169 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 RPS3AP9-201ENST00000417027 792 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL359265.2-201ENST00000434367 631 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 RPL7P28-201ENST00000437739 740 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC073264.2-201ENST00000448886 166 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL513533.1-201ENST00000453728 415 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 RPL32P14-201ENST00000463196 378 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC092451.1-201ENST00000480211 153 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 TPT1P3-201ENST00000492841 512 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC078918.1-201ENST00000498515 228 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC005921.1-201ENST00000510589 286 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 RNA5SP154-201ENST00000516193 111 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC093510.2-201ENST00000562820 896 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 MIR4644-201ENST00000579929 84 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC090616.5-202ENST00000582111 297 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 OR4G1P-201ENST00000588632 938 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC112230.1-201ENST00000604342 547 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 AC016542.1-201ENST00000608259 493 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL121890.3-201ENST00000618494 516 ntBASIC4.41□□□□□ -1.7
VMP1Q96GC9 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VMP1Q96GC9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.41□□□□□ -1.7
VMP1Q96GC9 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
VMP1Q96GC9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
VMP1Q96GC9 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VMP1Q96GC9 AL157700.1-201ENST00000561973 1432 ntBASIC4.4□□□□□ -1.7
VMP1Q96GC9 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
VMP1Q96GC9 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
VMP1Q96GC9 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VMP1Q96GC9 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VMP1Q96GC9 MIR192-201ENST00000384915 110 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VMP1Q96GC9 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VMP1Q96GC9 CYB5AP4-201ENST00000396692 399 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 RNA5SP104-201ENST00000410989 118 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 RN7SKP216-201ENST00000411050 312 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 RNU2-72P-201ENST00000411175 163 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VMP1Q96GC9 MTCYBP24-201ENST00000420387 1106 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 DEFB130D-201ENST00000426866 237 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 UBE2D3P3-201ENST00000426992 425 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 RPS27AP12-201ENST00000429552 465 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC004938.1-201ENST00000438468 308 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.4□□□□□ -1.71
VMP1Q96GC9 AL138878.2-201ENST00000440581 1241 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.4□□□□□ -1.71
VMP1Q96GC9 HMGN3P1-201ENST00000453847 193 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC079168.2-201ENST00000453977 416 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC007688.1-201ENST00000475592 759 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC025164.1-201ENST00000496249 478 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 MTCO2P9-201ENST00000503214 694 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC005798.1-201ENST00000513715 387 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC100770.1-201ENST00000532310 322 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.4□□□□□ -1.71
VMP1Q96GC9 AC137768.1-201ENST00000549998 553 ntBASIC4.4□□□□□ -1.71
VMP1Q96GC9 CR383656.6-201ENST00000550518 394 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms