Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC005154.2-201ENST00000438110 379 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC091685.2-201ENST00000454924 864 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 RN7SL860P-201ENST00000473738 223 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC093267.1-201ENST00000489176 961 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC021006.1-201ENST00000489849 553 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 KLHL2P1-201ENST00000508691 521 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC004980.4-201ENST00000513375 203 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 GMPSP1-201ENST00000514075 579 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 RNA5SP519-201ENST00000516480 119 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC021242.2-202ENST00000522129 545 ntTSL 4 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL591516.1-201ENST00000611326 274 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL356274.1-201ENST00000617064 410 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 MIR6853-201ENST00000619642 74 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 MIR6823-201ENST00000622118 61 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL732618.1-201ENST00000623251 301 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC107977.1-201ENST00000355745 939 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RNU6-304P-201ENST00000364855 107 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RNU1-101P-201ENST00000391171 127 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RAD23BP2-201ENST00000416003 1207 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RBMY2KP-201ENST00000418221 992 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC066692.1-201ENST00000421721 457 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 VN1R54P-201ENST00000435210 1049 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC110602.1-201ENST00000437414 318 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AL158214.1-201ENST00000444423 404 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RPL23AP11-201ENST00000475260 469 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC068724.1-201ENST00000487100 792 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 SNRPCP2-201ENST00000504370 475 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 RN7SKP43-201ENST00000516173 320 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AP005901.4-201ENST00000577336 569 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC020915.5-201ENST00000596836 964 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 IPO5P1-202ENST00000600039 287 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AL356218.2-201ENST00000605264 187 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC126915.2-201ENST00000610957 190 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC022467.1-201ENST00000614738 749 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 MIR6880-201ENST00000622851 62 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC111152.1-202ENST00000635848 339 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 CASC19-274ENST00000642018 970 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 CASC19-261ENST00000641853 1638 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
LINC00643Q86TS7 DPY19L2P2-203ENST00000435536 1858 ntBASIC2.16□□□□□ -2.06
LINC00643Q86TS7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
LINC00643Q86TS7 AL136164.4-201ENST00000625013 2135 ntBASIC2.15□□□□□ -2.06
LINC00643Q86TS7 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 VTRNA1-1-201ENST00000363120 99 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNA5SP510-201ENST00000364697 99 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 CCL7-202ENST00000394627 696 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNA5SP44-201ENST00000410446 133 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RN7SKP182-201ENST00000410772 298 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RPL31P45-201ENST00000419532 356 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 NPM1P49-201ENST00000448027 714 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNU6-1218P-201ENST00000458990 108 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RPS4XP13-201ENST00000483219 789 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RN7SL184P-201ENST00000488308 297 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms