Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL121612.2-201ENST00000612261 482 ntBASIC5.89□□□□□ -1.47
HMGB1P09429 AL627230.1-201ENST00000613077 211 ntBASIC5.89□□□□□ -1.47
HMGB1P09429 AL591926.8-201ENST00000616876 211 ntBASIC5.89□□□□□ -1.47
HMGB1P09429 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGB1P09429 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGB1P09429 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HMGB1P09429 AC107982.1-201ENST00000507171 1300 ntBASIC5.89□□□□□ -1.47
HMGB1P09429 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGB1P09429 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGB1P09429 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGB1P09429 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGB1P09429 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
HMGB1P09429 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.88□□□□□ -1.47
HMGB1P09429 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HMGB1P09429 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 RPL23P2-201ENST00000320371 421 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 ARF4P3-201ENST00000397387 509 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AL078599.1-201ENST00000402075 293 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.88□□□□□ -1.47
HMGB1P09429 RNU2-37P-201ENST00000410695 177 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 RN7SKP100-201ENST00000411258 284 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 RN7SKP273-201ENST00000411392 314 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.88□□□□□ -1.47
HMGB1P09429 AC004690.1-201ENST00000418216 328 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.88□□□□□ -1.47
HMGB1P09429 RPL34P20-201ENST00000442771 351 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AL163193.1-201ENST00000444895 788 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 AC010285.1-201ENST00000470580 392 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 RPL31P13-201ENST00000484151 370 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AC109462.1-201ENST00000491087 368 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 RPL21P131-201ENST00000497298 483 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AC006499.3-201ENST00000506077 748 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 RNA5SP73-201ENST00000516744 108 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AP001207.2-201ENST00000519490 539 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.88□□□□□ -1.47
HMGB1P09429 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.88□□□□□ -1.47
HMGB1P09429 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 AC109635.4-202ENST00000531666 412 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 TOMM20P2-201ENST00000540082 421 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.88□□□□□ -1.47
HMGB1P09429 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.88□□□□□ -1.47
HMGB1P09429 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 LARP7P2-201ENST00000575306 125 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.88□□□□□ -1.47
HMGB1P09429 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC5.88□□□□□ -1.47
HMGB1P09429 AC104763.3-201ENST00000613765 618 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 AC015914.2-201ENST00000618167 288 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 MIR6729-201ENST00000618194 65 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 AC048347.1-201ENST00000624621 427 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 CYP3A51P-201ENST00000633513 256 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.88□□□□□ -1.47
HMGB1P09429 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.88□□□□□ -1.47
HMGB1P09429 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 AP001350.1-201ENST00000601906 1524 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HMGB1P09429 USP8P1-201ENST00000494673 3183 ntBASIC5.88□□□□□ -1.47
HMGB1P09429 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HMGB1P09429 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC5.87□□□□□ -1.47
HMGB1P09429 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HMGB1P09429 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HMGB1P09429 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.87□□□□□ -1.47
HMGB1P09429 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 SNORA40.2-201ENST00000390847 128 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 ZNF602P-201ENST00000405929 924 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AC073052.1-201ENST00000440417 714 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 EXOSC3P1-201ENST00000448649 500 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 AC112206.1-201ENST00000468416 477 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AC108941.1-201ENST00000502853 530 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 RNA5SP92-201ENST00000516437 110 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.87□□□□□ -1.47
HMGB1P09429 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.87□□□□□ -1.47
HMGB1P09429 GSTP1P1-201ENST00000548078 319 ntBASIC5.87□□□□□ -1.47
HMGB1P09429 MIR4509-3-201ENST00000578671 94 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms