Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNORD116-5-201ENST00000384462 95 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 LINC01881-201ENST00000416103 412 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 KRR1P1-201ENST00000419430 803 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC234781.2-201ENST00000426370 994 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 USP9YP24-201ENST00000434374 697 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC5.39□□□□□ -1.55
COL3A1P02461 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 USP9YP17-201ENST00000444617 696 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC126121.1-201ENST00000482313 553 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC5.39□□□□□ -1.55
COL3A1P02461 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC5.39□□□□□ -1.55
COL3A1P02461 ZNF321P-202ENST00000550843 495 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.39□□□□□ -1.55
COL3A1P02461 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 AC068020.1-201ENST00000594215 661 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC010487.1-201ENST00000594408 1172 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.39□□□□□ -1.55
COL3A1P02461 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 AC011492.1-201ENST00000600023 315 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AL160237.3-201ENST00000604114 1013 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC025588.2-201ENST00000604851 466 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC092354.2-201ENST00000607786 514 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC239868.4-201ENST00000608318 671 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 OR7M1P-201ENST00000608946 533 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 MIR6875-201ENST00000617506 72 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 BX649567.1-201ENST00000642071 1134 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.38□□□□□ -1.55
COL3A1P02461 CR382285.2-201ENST00000624662 1495 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.38□□□□□ -1.55
COL3A1P02461 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL3A1P02461 SNORA60-201ENST00000362396 134 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 BMS1P3-201ENST00000372011 932 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.38□□□□□ -1.55
COL3A1P02461 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC5.38□□□□□ -1.55
COL3A1P02461 AC006946.1-201ENST00000429106 328 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.38□□□□□ -1.55
COL3A1P02461 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.38□□□□□ -1.55
COL3A1P02461 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.38□□□□□ -1.55
COL3A1P02461 MTCYBP14-201ENST00000457471 715 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 AC008427.1-201ENST00000503102 655 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 HPRT1P2-201ENST00000505250 544 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC5.38□□□□□ -1.55
COL3A1P02461 NDUFA5P2-201ENST00000519723 344 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 UBTFL9-201ENST00000534504 1148 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AGGF1P8-201ENST00000562979 1000 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.38□□□□□ -1.55
COL3A1P02461 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC5.38□□□□□ -1.55
COL3A1P02461 AP005136.1-201ENST00000579765 429 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC022916.3-201ENST00000592961 742 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 VN1R78P-201ENST00000597393 564 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 DEFB131E-202ENST00000602581 683 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 WT1-AS_8.1-201ENST00000615200 275 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC073530.2-201ENST00000623987 261 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC112484.5-201ENST00000624189 228 ntBASIC5.38□□□□□ -1.55
COL3A1P02461 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.38□□□□□ -1.55
COL3A1P02461 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL3A1P02461 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL3A1P02461 HSPD1P11-201ENST00000508643 1702 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC095050.2-201ENST00000510748 1458 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL3A1P02461 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
COL3A1P02461 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 Y_RNA.169-201ENST00000363745 96 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 Y_RNA.201-201ENST00000364052 96 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 SNORD51.1-201ENST00000365405 77 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 SNORA70.4-201ENST00000365509 134 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC025750.1-201ENST00000399891 379 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC5.37□□□□□ -1.55
COL3A1P02461 MTND4LP11-201ENST00000422184 280 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL451062.2-201ENST00000427515 271 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL353706.1-201ENST00000436728 494 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 RPS29P7-201ENST00000439662 171 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL031667.1-201ENST00000440222 725 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms