Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NCOR1P1-202ENST00000486162 291 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC073073.1-201ENST00000493920 463 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 DSTNP2-201ENST00000504533 515 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 MTND4P2-201ENST00000507767 1203 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC109471.1-201ENST00000511631 612 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RFPL4AP5-201ENST00000514977 504 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RNU6-885P-201ENST00000516607 104 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC106038.2-201ENST00000520706 568 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 HMGB1P40-201ENST00000525121 540 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 BRD9P1-201ENST00000529855 560 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS4BO75351 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS4BO75351 RN7SL52P-201ENST00000584271 284 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC080078.2-201ENST00000603766 501 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AL390816.3-201ENST00000604527 1066 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC005332.6-201ENST00000613178 446 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RN7SL722P-201ENST00000617780 284 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RN7SL565P-201ENST00000618246 284 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 AC025574.1-201ENST00000554784 1653 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 AC092104.1-201ENST00000497346 1441 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
VPS4BO75351 HSPA8P17-201ENST00000427029 1382 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 CASC19-221ENST00000641309 1382 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 STX3-208ENST00000641815 3236 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 THAP12P5-201ENST00000405864 2275 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS4BO75351 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 AC012618.3-205ENST00000637896 1496 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS4BO75351 RNA5SP335-201ENST00000363817 110 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 RNU6-1151P-201ENST00000384684 107 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 MT-TH-201ENST00000387441 69 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AL035079.1-201ENST00000405210 287 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AL450992.3-201ENST00000413192 568 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 RPL26P29-201ENST00000415623 438 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC013429.2-201ENST00000418798 781 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC048351.1-201ENST00000420064 602 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC245028.1-201ENST00000423259 256 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC012519.1-201ENST00000424588 610 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 COX6CP13-201ENST00000428703 226 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 RPL31P54-201ENST00000429803 370 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 MUPP-201ENST00000438111 566 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 RPL7P59-201ENST00000447700 943 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS4BO75351 RPL21P71-201ENST00000465598 459 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC109486.1-201ENST00000486833 374 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC005912.1-201ENST00000495392 255 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 LTV1P1-201ENST00000510683 1237 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS4BO75351 BLZF2P-201ENST00000553776 1130 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 AC007599.1-201ENST00000568688 1174 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS4BO75351 MIR3936-201ENST00000584304 110 ntBASIC5.03□□□□□ -1.6
VPS4BO75351 VN1R84P-201ENST00000593697 235 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms