Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.34□□□□□ -1.4
CCDC39Q9UFE4 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.34□□□□□ -1.4
CCDC39Q9UFE4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.4
CCDC39Q9UFE4 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC103591.2-201ENST00000265259 766 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 OR52B3P-201ENST00000314715 928 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 SNORA64.1-201ENST00000362600 132 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 Y_RNA.279-201ENST00000364763 95 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 RNA5SP105-201ENST00000391123 113 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 RPS27AP11-201ENST00000402798 447 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 COX5BP7-201ENST00000414780 274 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC127526.2-201ENST00000426436 775 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 Z80107.2-201ENST00000445127 392 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC108463.1-201ENST00000450258 347 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 RPS4XP15-201ENST00000489210 795 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 MTCYBP43-201ENST00000513621 740 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 OR4A12P-201ENST00000530847 918 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 HPRT1P3-201ENST00000539521 576 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AK6P1-201ENST00000540219 478 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 HSPE1P2-201ENST00000554777 306 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC127381.1-201ENST00000555979 939 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC015917.1-201ENST00000579654 510 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 MIR3668-201ENST00000582138 75 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 MIR6863-201ENST00000636112 90 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ABBA01000935.2-201ENST00000637477 838 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 AC007842.1-201ENST00000597336 2039 ntBASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC39Q9UFE4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CCT4P2-201ENST00000233836 1548 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 PROS2P-201ENST00000474651 1951 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 GAPDHP24-201ENST00000328713 983 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 RNU6-839P-201ENST00000363347 108 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 Y_RNA.142-201ENST00000363491 102 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 RNU6-780P-201ENST00000391030 104 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AL391422.1-201ENST00000402155 436 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AL009179.1-201ENST00000406085 265 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 HMGN1P20-201ENST00000411849 300 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 HMGB3P23-201ENST00000414981 585 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC007742.1-201ENST00000425789 329 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 ELOCP26-201ENST00000436067 329 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AL596266.1-201ENST00000448132 400 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 PRPF38AP1-201ENST00000451976 933 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC019235.1-201ENST00000503847 207 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 PSMA2P2-201ENST00000504319 686 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC111000.3-201ENST00000508057 576 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 IGBP1P1-201ENST00000554337 1009 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms