Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR6868-201ENST00000611215 58 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC009704.2-201ENST00000618739 483 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 MAPK10-349ENST00000641767 3661 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC000123.3-201ENST00000624029 4975 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 RNA5SP388-201ENST00000362584 119 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 RNA5SP283-201ENST00000365604 119 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ATF1P1-201ENST00000406040 927 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 HMGB3P18-201ENST00000406327 590 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 RNU4-6P-201ENST00000410804 122 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 HMGB3P31-201ENST00000413333 595 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC234782.4-201ENST00000417646 1048 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ETF1P3-201ENST00000430422 1160 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 RPL21P133-201ENST00000443666 476 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AL162151.2-201ENST00000448875 158 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 RPS11P1-201ENST00000451072 473 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC017037.1-201ENST00000508460 471 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC108043.1-201ENST00000512696 574 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 MIR2116-201ENST00000517221 80 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC134698.5-201ENST00000519444 336 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 UBTFL9-201ENST00000534504 1148 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 TOMM20P2-201ENST00000540082 421 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC104229.1-201ENST00000561364 255 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 MIR4512-201ENST00000583257 77 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 NF1P5-201ENST00000588287 448 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AC095038.2-201ENST00000621464 1070 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ATE1-AS1-202ENST00000636460 506 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 U6.107-201ENST00000637108 79 ntBASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
LHX3Q9UBR4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 MIR16-2-201ENST00000362117 81 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 RN7SKP227-201ENST00000364445 330 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 ATP5F1P6-201ENST00000402768 767 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 PPIAP31-201ENST00000405422 495 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL158050.1-201ENST00000416077 457 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC073136.2-201ENST00000417282 849 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 VDAC1P6-201ENST00000430062 855 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL512661.1-201ENST00000434586 1253 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 RPL21P89-201ENST00000444021 467 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 IFNWP4-201ENST00000453148 294 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 RPL23AP71-201ENST00000470966 469 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC022795.1-201ENST00000473808 480 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 TRBV8-2-201ENST00000475637 270 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 FTH1P21-201ENST00000512179 511 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 SNORD116-26-201ENST00000516006 96 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC090751.1-201ENST00000566966 267 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 PCNAP1-202ENST00000595299 752 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AP003117.1-201ENST00000602771 554 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 OR2BH1P-201ENST00000608850 864 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC131238.1-201ENST00000617135 328 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL163051.2-201ENST00000618976 735 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms