Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 MIR8069-1-201ENST00000616627 86 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 MIR8069-2-201ENST00000621412 86 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 MIR422A-201ENST00000362286 90 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 MIR1271-201ENST00000408537 86 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 HMGN2P27-201ENST00000427352 270 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS13AQ96RL7 AC087241.4-201ENST00000612441 480 ntBASIC3.41□□□□□ -1.86
VPS13AQ96RL7 ASNSP3-201ENST00000451989 1306 ntBASIC3.4□□□□□ -1.86
VPS13AQ96RL7 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 AC006028.1-201ENST00000438379 402 ntBASIC3.4□□□□□ -1.86
VPS13AQ96RL7 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 HIGD1AP1-201ENST00000550979 275 ntBASIC3.4□□□□□ -1.86
VPS13AQ96RL7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.4□□□□□ -1.86
VPS13AQ96RL7 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 RNA5SP197-201ENST00000363357 119 ntBASIC3.4□□□□□ -1.87
VPS13AQ96RL7 MIR195-201ENST00000385194 87 ntBASIC3.4□□□□□ -1.87
VPS13AQ96RL7 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 AC008011.1-201ENST00000545989 227 ntBASIC3.4□□□□□ -1.87
VPS13AQ96RL7 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS13AQ96RL7 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 OR5H2-201ENST00000355273 945 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 EEF1A1P41-201ENST00000414667 207 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 SETP9-201ENST00000423837 832 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 SRIP2-201ENST00000428470 166 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC139713.2-210ENST00000641741 992 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 SAGE2P-201ENST00000420011 2126 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AL357075.1-201ENST00000404107 726 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 MRPS33P4-201ENST00000434892 317 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 RPL23AP89-201ENST00000439324 255 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 SLC31A1P1-201ENST00000451221 567 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 NPM1P28-201ENST00000492269 840 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC026801.2-201ENST00000515352 425 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC245100.7-201ENST00000609678 442 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 MIR7843-201ENST00000622274 79 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AL135938.1-201ENST00000443141 297 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 LSM3P2-201ENST00000551246 273 ntBASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS13AQ96RL7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 NUP35P1-201ENST00000422734 947 ntBASIC3.38□□□□□ -1.87
VPS13AQ96RL7 RPL21P112-201ENST00000434403 463 ntBASIC3.38□□□□□ -1.87
VPS13AQ96RL7 HMGB1P18-201ENST00000438801 619 ntBASIC3.38□□□□□ -1.87
VPS13AQ96RL7 GTF3AP5-201ENST00000442645 697 ntBASIC3.38□□□□□ -1.87
VPS13AQ96RL7 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms