Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 IGKV1D-22-201ENST00000518953 324 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 HMGB1P41-201ENST00000520234 440 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 IGHV1-14-201ENST00000523391 241 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC107918.3-201ENST00000533272 382 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC023050.3-201ENST00000541142 333 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC027667.1-201ENST00000545814 304 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC005341.1-201ENST00000571086 708 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC091193.1-201ENST00000604640 448 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC015982.1-201ENST00000608113 465 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC004908.2-201ENST00000609090 574 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MIR6085-201ENST00000618314 110 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MIR6813-201ENST00000621638 56 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC099494.2-201ENST00000623371 978 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MTND1P37-201ENST00000636562 264 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC02495-203ENST00000636704 242 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 SMG1P5-202ENST00000529428 4219 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 SMG1P2-201ENST00000566127 4221 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL451142.2-201ENST00000429076 2090 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SNORD35A-201ENST00000363389 86 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 U3.11-201ENST00000364476 212 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RN7SKP6-201ENST00000364795 319 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 Y_RNA.367-201ENST00000365544 101 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RNU4-48P-201ENST00000365559 182 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RNU6-116P-201ENST00000384042 109 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RNU6-339P-201ENST00000384310 107 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL356432.1-201ENST00000405809 419 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RN7SKP281-201ENST00000410472 352 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL645939.3-201ENST00000435408 225 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 TAAR7P-201ENST00000436141 242 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 MRPS21P3-201ENST00000436696 262 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC013403.1-201ENST00000436954 263 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL356121.1-201ENST00000442911 156 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL356010.1-201ENST00000456364 102 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SNX18P26-201ENST00000458433 740 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ST13P14-201ENST00000474095 734 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC093278.1-201ENST00000494700 600 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 NDUFA5P12-201ENST00000503796 343 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC026427.2-201ENST00000506228 536 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC138517.1-201ENST00000515724 568 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 BTF3P12-201ENST00000519620 469 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SUB1P1-201ENST00000524415 382 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC103843.2-201ENST00000530523 682 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 OR5AL2P-201ENST00000532185 920 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC079075.1-201ENST00000559543 878 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms