Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPS4XP1-201ENST00000482189 787 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 OR5M14P-201ENST00000506803 618 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RAC1P2-201ENST00000511164 579 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RNU1-143P-201ENST00000516296 146 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RNU6-826P-201ENST00000516827 104 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RN7SKP5-201ENST00000517045 272 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 GCSHP4-201ENST00000538792 439 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AC091516.1-201ENST00000549191 703 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 SNX6P1-201ENST00000601728 1224 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AC113403.1-201ENST00000604910 193 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 U1.23-201ENST00000610293 146 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RNU1-68P-201ENST00000615382 146 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 MIR6837-201ENST00000620884 64 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 U1.39-201ENST00000621562 146 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CCT5-215ENST00000625723 135 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 IPO5-229ENST00000631030 192 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AC017071.1-201ENST00000564407 2204 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AL353743.4-201ENST00000422653 1547 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RNU1-70P-201ENST00000362618 164 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MIR138-2-201ENST00000384916 84 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 U3.36-201ENST00000408418 213 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RNU4-25P-201ENST00000410569 230 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL359885.1-201ENST00000415786 903 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL356968.1-201ENST00000416622 474 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL049820.1-201ENST00000442936 423 ntTSL 2 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 FCF1P7-201ENST00000451185 558 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MTND6P32-201ENST00000457611 483 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RPS20P4-201ENST00000461659 355 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 ST13P14-201ENST00000474095 734 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 KRTAP5-14P-201ENST00000502328 121 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC106822.1-201ENST00000502647 526 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RN7SKP276-201ENST00000516242 268 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC087369.1-201ENST00000520775 996 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC022790.1-201ENST00000522872 204 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MED28P5-201ENST00000528254 438 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC023043.3-201ENST00000593113 385 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC007423.1-201ENST00000605009 627 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 uc_338.29-201ENST00000615099 168 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AC011944.2-201ENST00000624440 683 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MIR6733-201ENST00000635723 61 ntBASIC2.18□□□□□ -2.06
LINC00643Q86TS7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LINC00643Q86TS7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 S100A7-201ENST00000368722 442 ntAPPRIS P1 TSL 3 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 ZNF37CP-201ENST00000406795 241 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 RPL19P1-201ENST00000411635 428 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 MTND4P22-201ENST00000413116 1169 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.17□□□□□ -2.06
LINC00643Q86TS7 HSPE1P1-201ENST00000421494 318 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL356806.1-201ENST00000422524 916 ntBASIC2.17□□□□□ -2.06
LINC00643Q86TS7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms