Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH6P52701 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH6P52701 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH6P52701 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH6P52701 RN7SL853P-201ENST00000617250 223 ntBASIC5.18□□□□□ -1.58
MSH6P52701 AL669942.2-201ENST00000620352 697 ntBASIC5.18□□□□□ -1.58
MSH6P52701 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH6P52701 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH6P52701 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH6P52701 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH6P52701 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH6P52701 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH6P52701 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.18□□□□□ -1.58
MSH6P52701 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
MSH6P52701 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 RPF2P1-201ENST00000424137 906 ntBASIC5.17□□□□□ -1.58
MSH6P52701 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 AC010285.3-201ENST00000511668 676 ntBASIC5.17□□□□□ -1.58
MSH6P52701 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.17□□□□□ -1.58
MSH6P52701 SNORA62.6-201ENST00000606322 83 ntBASIC5.17□□□□□ -1.58
MSH6P52701 MIR7851-201ENST00000610611 160 ntBASIC5.17□□□□□ -1.58
MSH6P52701 AC095038.2-201ENST00000621464 1070 ntBASIC5.17□□□□□ -1.58
MSH6P52701 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH6P52701 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC5.17□□□□□ -1.58
MSH6P52701 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH6P52701 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH6P52701 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 AC090337.1-201ENST00000579651 2074 ntBASIC5.17□□□□□ -1.58
MSH6P52701 HSPD1P11-201ENST00000508643 1702 ntBASIC5.17□□□□□ -1.58
MSH6P52701 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH6P52701 CDY11P-201ENST00000447168 1651 ntBASIC5.17□□□□□ -1.58
MSH6P52701 AC007685.1-201ENST00000329806 452 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC093719.1-202ENST00000392735 373 ntBASIC5.16□□□□□ -1.58
MSH6P52701 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH6P52701 AC087650.1-201ENST00000431445 468 ntBASIC5.16□□□□□ -1.58
MSH6P52701 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.16□□□□□ -1.58
MSH6P52701 RPL26P28-201ENST00000451325 435 ntBASIC5.16□□□□□ -1.58
MSH6P52701 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH6P52701 RPL5P16-201ENST00000471467 790 ntBASIC5.16□□□□□ -1.58
MSH6P52701 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 RPL5P23-201ENST00000496040 868 ntBASIC5.16□□□□□ -1.58
MSH6P52701 SUMO2P4-201ENST00000504193 276 ntBASIC5.16□□□□□ -1.58
MSH6P52701 IGHV3-32-201ENST00000519182 355 ntBASIC5.16□□□□□ -1.58
MSH6P52701 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH6P52701 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH6P52701 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH6P52701 AC009303.3-201ENST00000591103 736 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC233280.2-201ENST00000603917 1070 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH6P52701 AC133552.5-201ENST00000604266 540 ntBASIC5.16□□□□□ -1.58
MSH6P52701 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH6P52701 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 LINC01109-201ENST00000603837 3081 ntBASIC5.16□□□□□ -1.58
MSH6P52701 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.16□□□□□ -1.58
MSH6P52701 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
MSH6P52701 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 NACA3P-201ENST00000359690 648 ntBASIC5.16□□□□□ -1.58
MSH6P52701 RNA5SP296-201ENST00000410523 111 ntBASIC5.16□□□□□ -1.58
MSH6P52701 HSFY4P-201ENST00000415994 1181 ntBASIC5.16□□□□□ -1.58
MSH6P52701 RNF19BPX-201ENST00000426224 625 ntBASIC5.16□□□□□ -1.58
MSH6P52701 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH6P52701 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH6P52701 HIGD1AP3-201ENST00000515857 278 ntBASIC5.16□□□□□ -1.58
MSH6P52701 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH6P52701 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH6P52701 LARP7P3-201ENST00000579888 337 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC006116.10-201ENST00000591836 581 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.16□□□□□ -1.58
MSH6P52701 AC125494.3-201ENST00000602759 455 ntBASIC5.16□□□□□ -1.58
MSH6P52701 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH6P52701 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.15□□□□□ -1.58
MSH6P52701 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSH6P52701 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSH6P52701 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
MSH6P52701 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.15□□□□□ -1.58
MSH6P52701 OR4G1P-202ENST00000641173 1788 ntBASIC5.15□□□□□ -1.59
MSH6P52701 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.15□□□□□ -1.59
MSH6P52701 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
MSH6P52701 MAPK10-253ENST00000641010 4072 ntBASIC5.15□□□□□ -1.59
MSH6P52701 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSH6P52701 RPL23AP57-201ENST00000332361 466 ntBASIC5.15□□□□□ -1.59
MSH6P52701 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH6P52701 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH6P52701 RN7SL585P-201ENST00000470538 280 ntBASIC5.15□□□□□ -1.59
MSH6P52701 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH6P52701 RAC1P2-201ENST00000511164 579 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms