Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 AC023161.2-201ENST00000551218 780 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AP005262.1-201ENST00000582646 997 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AL133247.2-201ENST00000603236 482 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.44□□□□□ -1.7
BRCA1P38398 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
BRCA1P38398 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.44□□□□□ -1.7
BRCA1P38398 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.44□□□□□ -1.7
BRCA1P38398 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 RNA5SP197-201ENST00000363357 119 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.43□□□□□ -1.7
BRCA1P38398 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.43□□□□□ -1.7
BRCA1P38398 AC006116.10-201ENST00000591836 581 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.43□□□□□ -1.7
BRCA1P38398 OR7M1P-201ENST00000608946 533 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 U4.6-201ENST00000621618 127 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
BRCA1P38398 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 AC027290.2-201ENST00000623210 18662 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
BRCA1P38398 TAF9BP1-201ENST00000396646 746 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 UBE2V1P2-201ENST00000397758 440 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AL139095.1-201ENST00000404326 391 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 RNA5SP146-201ENST00000410743 123 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 RPL26P28-201ENST00000451325 435 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.43□□□□□ -1.7
BRCA1P38398 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.43□□□□□ -1.7
BRCA1P38398 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC4.43□□□□□ -1.7
BRCA1P38398 AC011611.1-201ENST00000552179 197 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AL121594.4-201ENST00000556211 1196 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 NCAPGP2-201ENST00000557911 754 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC068020.1-201ENST00000594215 661 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AP000255.1-201ENST00000610276 676 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 AC074140.1-201ENST00000621617 208 ntBASIC4.43□□□□□ -1.7
BRCA1P38398 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC4.43□□□□□ -1.7
BRCA1P38398 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
BRCA1P38398 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.43□□□□□ -1.7
BRCA1P38398 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
BRCA1P38398 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
BRCA1P38398 RNA5SP424-201ENST00000390988 115 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.42□□□□□ -1.7
BRCA1P38398 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.42□□□□□ -1.7
BRCA1P38398 DYNLL1P7-201ENST00000429273 258 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.42□□□□□ -1.7
BRCA1P38398 AC005008.1-201ENST00000456151 612 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.42□□□□□ -1.7
BRCA1P38398 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.42□□□□□ -1.7
BRCA1P38398 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.42□□□□□ -1.7
BRCA1P38398 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 AC084036.1-201ENST00000609190 508 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 AL713922.2-201ENST00000619384 716 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
BRCA1P38398 OR51C1P-202ENST00000641159 1444 ntBASIC4.42□□□□□ -1.7
BRCA1P38398 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
BRCA1P38398 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 AC093719.1-202ENST00000392735 373 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 RN7SKP284-201ENST00000411002 343 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 GNG5P5-201ENST00000420444 220 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC011742.1-201ENST00000431448 434 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 VN1R25P-201ENST00000443385 738 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms