Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC135068.5-201ENST00000624197 983 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A1P12109 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.78□□□□□ -1.48
COL6A1P12109 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 Y_RNA.359-201ENST00000365498 102 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL6A1P12109 HMGB3P18-201ENST00000406327 590 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 RN7SKP114-201ENST00000410327 279 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC007435.1-201ENST00000421086 415 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 RPL12P34-201ENST00000424532 479 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC092651.1-201ENST00000426110 312 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 MTND6P18-201ENST00000439477 513 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AL353093.1-201ENST00000441292 436 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AL137845.2-201ENST00000444292 988 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 MTCO2P25-201ENST00000447065 681 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 RHEBP2-201ENST00000450289 600 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 snoU13.1-201ENST00000459157 104 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC126182.1-201ENST00000478134 357 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 NCOR1P1-202ENST00000486162 291 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 RN7SL244P-201ENST00000493405 297 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 GAPDHP56-201ENST00000506031 988 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC023632.1-201ENST00000518463 375 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL6A1P12109 AL139174.1-201ENST00000531489 886 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 ROCK1P1-201ENST00000573767 549 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A1P12109 AP001267.4-201ENST00000602598 545 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC018714.1-201ENST00000605028 208 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC131235.4-201ENST00000609288 620 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 Z99129.1-201ENST00000612510 255 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AL121873.1-201ENST00000616013 524 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 AC011815.3-201ENST00000624194 473 ntBASIC5.78□□□□□ -1.48
COL6A1P12109 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL6A1P12109 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.78□□□□□ -1.48
COL6A1P12109 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A1P12109 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL6A1P12109 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A1P12109 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL6A1P12109 AC092447.7-201ENST00000422212 1621 ntBASIC5.77□□□□□ -1.48
COL6A1P12109 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 MTND4P31-201ENST00000425607 1343 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.77□□□□□ -1.49
COL6A1P12109 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 RNU4-21P-201ENST00000362802 126 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 RNU6-1042P-201ENST00000384204 107 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 RPS3AP23-201ENST00000401762 784 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 NRBF2P2-201ENST00000413087 861 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 RPS27AP7-201ENST00000422792 455 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 YWHAEP5-201ENST00000431545 765 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC234064.1-201ENST00000436312 247 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 RPL7P11-201ENST00000437586 658 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 KATNBL1P6-201ENST00000453433 915 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AC116337.2-201ENST00000477662 156 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms