Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 USP9YP9-201ENST00000429406 715 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 MTCO1P57-201ENST00000432182 261 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 ARL2BPP10-201ENST00000446487 531 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC025459.1-201ENST00000504072 156 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 NDUFB4P9-201ENST00000511646 388 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AP000827.1-201ENST00000527814 258 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 TRAV11-201ENST00000539512 339 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 CR383656.6-201ENST00000550518 394 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 UBE2FP2-201ENST00000566646 462 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 MTCO3P22-201ENST00000603219 784 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 LLPHP1-201ENST00000603571 367 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC098935.2-201ENST00000604222 466 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL451044.1-201ENST00000604867 238 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL049634.3-201ENST00000604968 457 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL392112.1-201ENST00000605115 829 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL136295.6-201ENST00000610486 658 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL161616.1-201ENST00000611867 286 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 U6.48-201ENST00000618523 106 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AL139089.1-201ENST00000620372 975 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 OR6C71P-202ENST00000641886 1107 ntBASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.17□□□□□ -1.9
RBFOX3A6NFN3 NMD3P1-201ENST00000439704 1488 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 HNRNPDP2-201ENST00000406475 478 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 LINC01881-201ENST00000416103 412 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 CHIAP3-201ENST00000423668 1133 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL355994.1-201ENST00000424379 260 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL445528.1-201ENST00000426330 420 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MRPS33P4-201ENST00000434892 317 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL512326.1-201ENST00000443050 721 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 RPS29P31-201ENST00000446147 164 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 PPIAP3-201ENST00000450588 505 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 DHFRP3-201ENST00000455595 559 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 HMGN2P7-201ENST00000456186 273 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 RPL37P6-202ENST00000464216 403 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 RPL7P24-201ENST00000493052 752 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC090071.1-201ENST00000507713 644 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 RNA5SP73-201ENST00000516744 108 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MTND1P6-201ENST00000523621 946 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 OR4C2P-201ENST00000530855 1064 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MIR4425-201ENST00000580572 84 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MIR4737-201ENST00000583979 81 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AP001160.4-201ENST00000596971 382 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC119501.1-201ENST00000603646 475 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 AC110792.4-201ENST00000609843 298 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 MIR6820-201ENST00000611508 62 ntBASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
RBFOX3A6NFN3 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.15□□□□□ -1.9
RBFOX3A6NFN3 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.9
RBFOX3A6NFN3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.15□□□□□ -1.9
RBFOX3A6NFN3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
RBFOX3A6NFN3 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.15□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms