Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 AC104417.2-201ENST00000562989 1793 ntBASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 HMGA1P5-201ENST00000412453 271 ntBASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 CCR12P-201ENST00000446203 998 ntBASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 WWOX-216ENST00000569818 525 ntBASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 LINC01521-201ENST00000504184 1943 ntBASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PAAF1Q9BRP4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 AL138966.2-201ENST00000621997 464 ntBASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PAAF1Q9BRP4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.64■□□□□ 0.9
PAAF1Q9BRP4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.64■□□□□ 0.9
PAAF1Q9BRP4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PAAF1Q9BRP4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 NTF6B-201ENST00000591913 560 ntBASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
PAAF1Q9BRP4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 AL353719.1-201ENST00000566847 864 ntBASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 SDHAP1-207ENST00000440850 2000 ntBASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PAAF1Q9BRP4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 ZNF815P-204ENST00000434898 1737 ntBASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms