Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 TEX21P-204ENST00000641479 1693 ntBASIC16.85■□□□□ 0.29
NKX3-1Q99801 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.85■□□□□ 0.29
NKX3-1Q99801 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 AC018553.1-201ENST00000616682 1458 ntBASIC16.85■□□□□ 0.29
NKX3-1Q99801 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.85■□□□□ 0.29
NKX3-1Q99801 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC007322.1-201ENST00000426983 750 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 AL589743.5-201ENST00000616611 1050 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC026471.1-201ENST00000564629 3026 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 CROCCP3-202ENST00000420820 1947 ntBASIC16.84■□□□□ 0.29
NKX3-1Q99801 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
NKX3-1Q99801 AC005332.8-201ENST00000622750 2735 ntBASIC16.83■□□□□ 0.29
NKX3-1Q99801 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
NKX3-1Q99801 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
NKX3-1Q99801 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 RAP2CP1-201ENST00000605103 478 ntBASIC16.83■□□□□ 0.28
NKX3-1Q99801 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.83■□□□□ 0.28
NKX3-1Q99801 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NKX3-1Q99801 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms