Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 PARL-206ENST00000435888 1098 ntTSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 AL137784.2-201ENST00000607332 1000 ntBASIC14.49□□□□□ -0.09
LINC00477Q96M19 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 MIPEPP3-201ENST00000412105 444 ntBASIC14.48□□□□□ -0.09
LINC00477Q96M19 OR2A1-AS1-201ENST00000462305 773 ntBASIC14.48□□□□□ -0.09
LINC00477Q96M19 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 AL121832.2-201ENST00000610979 668 ntBASIC14.48□□□□□ -0.09
LINC00477Q96M19 AL050303.2-201ENST00000619798 666 ntBASIC14.48□□□□□ -0.09
LINC00477Q96M19 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LINC00477Q96M19 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00477Q96M19 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 AC093503.3-201ENST00000624917 2352 ntBASIC14.47□□□□□ -0.09
LINC00477Q96M19 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 METTL15-202ENST00000403099 795 ntTSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 DUSP5P2-201ENST00000426873 1033 ntBASIC14.47□□□□□ -0.09
LINC00477Q96M19 GLI3-203ENST00000437480 451 ntTSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 AC092118.2-201ENST00000613495 667 ntBASIC14.47□□□□□ -0.09
LINC00477Q96M19 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LINC00477Q96M19 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00477Q96M19 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms