Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 AL645929.1-201ENST00000420084 975 ntBASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 EMBP1-201ENST00000458200 901 ntBASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 AL732292.2-201ENST00000609649 430 ntBASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 AC020907.5-201ENST00000624372 1936 ntBASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 AL031432.5-201ENST00000641059 760 ntBASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC88AQ3V6T2 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 AP000523.1-201ENST00000398242 1049 ntBASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 UNC93B7-201ENST00000509439 705 ntBASIC23.73■■□□□ 1.39
CCDC88AQ3V6T2 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 GABARAPL3-202ENST00000624044 1851 ntBASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 AL022342.1-201ENST00000400363 863 ntBASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC88AQ3V6T2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 TMEM179-206ENST00000616017 1645 ntBASIC23.71■■□□□ 1.39
CCDC88AQ3V6T2 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 AC140113.3-201ENST00000605663 199 ntBASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.7■■□□□ 1.39
CCDC88AQ3V6T2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC88AQ3V6T2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms