Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL28A1Q2UY09 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 DGCR10-201ENST00000609839 495 ntBASIC18.58■□□□□ 0.56
COL28A1Q2UY09 AC116407.4-201ENST00000623319 1061 ntBASIC18.58■□□□□ 0.56
COL28A1Q2UY09 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL28A1Q2UY09 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 AL157384.1-201ENST00000445995 2473 ntBASIC18.57■□□□□ 0.56
COL28A1Q2UY09 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 AL671277.2-201ENST00000458060 996 ntBASIC18.57■□□□□ 0.56
COL28A1Q2UY09 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.57■□□□□ 0.56
COL28A1Q2UY09 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 KRT8P36-201ENST00000489121 1440 ntBASIC18.57■□□□□ 0.56
COL28A1Q2UY09 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL28A1Q2UY09 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 AC011558.1-201ENST00000623459 338 ntBASIC18.56■□□□□ 0.56
COL28A1Q2UY09 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL28A1Q2UY09 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL28A1Q2UY09 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 AL359075.1-203ENST00000462729 1002 ntBASIC18.54■□□□□ 0.56
COL28A1Q2UY09 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 B3GAT3P1-201ENST00000471720 806 ntBASIC18.54■□□□□ 0.56
COL28A1Q2UY09 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 SLC25A1P4-201ENST00000567977 778 ntBASIC18.54■□□□□ 0.56
COL28A1Q2UY09 RN7SL510P-201ENST00000581311 263 ntBASIC18.54■□□□□ 0.56
COL28A1Q2UY09 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL28A1Q2UY09 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms