Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 AC012676.1-201ENST00000574705 1949 ntBASIC24.35■■□□□ 1.49
RFC4P35249 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.35■■□□□ 1.49
RFC4P35249 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.35■■□□□ 1.49
RFC4P35249 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.35■■□□□ 1.49
RFC4P35249 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.35■■□□□ 1.49
RFC4P35249 PRELID1P1-202ENST00000567272 903 ntBASIC24.35■■□□□ 1.49
RFC4P35249 RN7SL510P-201ENST00000581311 263 ntBASIC24.35■■□□□ 1.49
RFC4P35249 KLK8-205ENST00000593490 267 ntTSL 3 BASIC24.35■■□□□ 1.49
RFC4P35249 AC092329.2-201ENST00000598402 547 ntBASIC24.35■■□□□ 1.49
RFC4P35249 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RFC4P35249 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
RFC4P35249 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC24.34■■□□□ 1.49
RFC4P35249 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.34■■□□□ 1.49
RFC4P35249 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC24.34■■□□□ 1.49
RFC4P35249 HBZP1-201ENST00000354915 429 ntBASIC24.34■■□□□ 1.49
RFC4P35249 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC24.34■■□□□ 1.49
RFC4P35249 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.34■■□□□ 1.49
RFC4P35249 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC24.34■■□□□ 1.49
RFC4P35249 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RFC4P35249 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC24.34■■□□□ 1.49
RFC4P35249 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC24.34■■□□□ 1.49
RFC4P35249 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.33■■□□□ 1.49
RFC4P35249 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
RFC4P35249 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.33■■□□□ 1.49
RFC4P35249 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
RFC4P35249 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
RFC4P35249 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.33■■□□□ 1.49
RFC4P35249 AL645929.1-201ENST00000420084 975 ntBASIC24.33■■□□□ 1.49
RFC4P35249 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RFC4P35249 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC24.33■■□□□ 1.49
RFC4P35249 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC24.33■■□□□ 1.49
RFC4P35249 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.33■■□□□ 1.49
RFC4P35249 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
RFC4P35249 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RFC4P35249 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
RFC4P35249 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC24.32■■□□□ 1.48
RFC4P35249 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 GOLGA2P11-201ENST00000562660 1621 ntBASIC24.32■■□□□ 1.48
RFC4P35249 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC24.32■■□□□ 1.48
RFC4P35249 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
RFC4P35249 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.32■■□□□ 1.48
RFC4P35249 MIR4674-201ENST00000582457 87 ntBASIC24.32■■□□□ 1.48
RFC4P35249 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
RFC4P35249 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
RFC4P35249 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RFC4P35249 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
RFC4P35249 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.31■■□□□ 1.48
RFC4P35249 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.31■■□□□ 1.48
RFC4P35249 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
RFC4P35249 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.31■■□□□ 1.48
RFC4P35249 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.31■■□□□ 1.48
RFC4P35249 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC24.31■■□□□ 1.48
RFC4P35249 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC24.31■■□□□ 1.48
RFC4P35249 SKP2-204ENST00000508514 821 ntTSL 3 BASIC24.31■■□□□ 1.48
RFC4P35249 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
RFC4P35249 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RFC4P35249 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.31■■□□□ 1.48
RFC4P35249 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
RFC4P35249 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
RFC4P35249 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RFC4P35249 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
RFC4P35249 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
RFC4P35249 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.3■■□□□ 1.48
RFC4P35249 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RFC4P35249 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.3■■□□□ 1.48
RFC4P35249 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RFC4P35249 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RFC4P35249 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RFC4P35249 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.3■■□□□ 1.48
RFC4P35249 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RFC4P35249 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms