Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CR383656.6-201ENST00000550518 394 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AC012254.4-201ENST00000588843 273 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 MTCO2P2-201ENST00000591258 225 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AC104785.1-201ENST00000603220 588 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AC093673.2-201ENST00000609674 331 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 AC083865.1-201ENST00000636634 831 ntBASIC4.37□□□□□ -1.71
SIX2Q9NPC8 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SIX2Q9NPC8 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC005332.5-201ENST00000591222 2919 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 SNORD35B-201ENST00000363660 87 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 ZNF602P-201ENST00000405929 924 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 OR8G2P-201ENST00000412796 908 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 TPT1P2-201ENST00000413105 503 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC234781.4-201ENST00000419384 244 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 HMGB3P10-201ENST00000434734 572 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC073143.1-201ENST00000436316 395 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 RPS4XP4-201ENST00000443195 763 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 EXOSC3P1-201ENST00000448649 500 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 RPL29P14-201ENST00000495837 428 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 HPRT1P2-201ENST00000505250 544 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 SNORA19.3-201ENST00000516165 130 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 RNA5SP228-201ENST00000516232 133 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC026407.1-201ENST00000518369 204 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AP001207.2-201ENST00000519490 539 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AGGF1P5-201ENST00000567900 919 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 CLIC4P2-201ENST00000601934 717 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 RPP40P2-201ENST00000603596 712 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AL109659.3-201ENST00000624985 950 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 MIR7641-1-201ENST00000627518 61 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.36□□□□□ -1.71
SIX2Q9NPC8 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SIX2Q9NPC8 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC018555.1-201ENST00000567548 1980 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC023128.2-201ENST00000420880 1223 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 COX6CP15-201ENST00000426313 211 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 RPL23AP4-201ENST00000427757 463 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 MTND2P2-201ENST00000434633 945 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 ARAFP2-201ENST00000440565 559 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 VN1R25P-201ENST00000443385 738 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AL451050.1-201ENST00000450126 415 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC098826.2-201ENST00000452011 651 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 VN1R40P-201ENST00000455196 941 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 RPS3AP6-201ENST00000484430 795 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 RPL7P24-201ENST00000493052 752 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC114322.1-201ENST00000506771 926 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 RNU6-276P-201ENST00000516114 96 ntBASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.35□□□□□ -1.71
SIX2Q9NPC8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms