Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RNU6-549P-201ENST00000384433 107 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 MIR921-201ENST00000401133 56 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL121972.1-201ENST00000402023 252 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL009174.1-201ENST00000426577 416 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL390879.2-203ENST00000426943 1121 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RPL23AP1-201ENST00000428990 471 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RPL32P14-201ENST00000463196 378 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RN7SL354P-201ENST00000469282 294 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RN7SL481P-201ENST00000477764 299 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 CEACAMP10-202ENST00000495431 496 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 OR5H3P-201ENST00000502817 919 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC016065.2-201ENST00000514530 444 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 HIGD1AP3-201ENST00000515857 278 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC209154.1-201ENST00000582156 337 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC010928.3-201ENST00000587712 541 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC007687.1-201ENST00000602704 304 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AC023762.1-201ENST00000603280 584 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL139286.1-201ENST00000604465 483 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AP000255.1-201ENST00000610276 676 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 uc_338.18-201ENST00000615451 175 ntBASIC5.9□□□□□ -1.46
CHMP4AQ9BY43 AL355578.1-201ENST00000607405 1328 ntBASIC5.9□□□□□ -1.47
CHMP4AQ9BY43 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP4AQ9BY43 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP4AQ9BY43 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CHMP4AQ9BY43 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.9□□□□□ -1.47
CHMP4AQ9BY43 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 MAPK10-303ENST00000641324 3959 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 RNU6-932P-201ENST00000391108 106 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 ZNF603P-201ENST00000405613 487 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AL355812.1-201ENST00000603215 216 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AC008782.1-201ENST00000603386 430 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AL157700.1-201ENST00000561973 1432 ntBASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
CHMP4AQ9BY43 AC000374.1-201ENST00000434698 1745 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC021146.4-201ENST00000309229 279 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 SNORA7.2-201ENST00000364446 145 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 RNA5SP332-201ENST00000391063 115 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 VDAC1P9-201ENST00000412766 841 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC009480.2-201ENST00000422916 432 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 RPL21P112-201ENST00000434403 463 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 Z95152.1-201ENST00000453556 656 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 RPL23AP65-201ENST00000475608 468 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC005726.1-201ENST00000494679 427 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 RFPL1S-203ENST00000539579 330 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 EIF5A2P1-201ENST00000564027 460 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 AL049634.3-201ENST00000604968 457 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 MARK2P15-201ENST00000432204 2186 ntBASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP4AQ9BY43 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.87□□□□□ -1.47
CHMP4AQ9BY43 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
CHMP4AQ9BY43 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP4AQ9BY43 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms