Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS39Q96JC1 XPOTP1-201ENST00000443317 2398 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 SNORD74.4-201ENST00000364129 80 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RNU6-398P-201ENST00000384143 109 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 CYB5AP4-201ENST00000396692 399 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RNU2-21P-201ENST00000410368 188 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RNA5SP104-201ENST00000410989 118 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPS15AP40-201ENST00000419621 391 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC069213.2-201ENST00000420238 366 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPL23AP1-201ENST00000428990 471 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 ELOCP18-201ENST00000434209 337 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPS26P40-201ENST00000435209 294 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 PHBP16-201ENST00000446318 950 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPL29P29-201ENST00000448725 423 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RAD23BP3-201ENST00000454157 1152 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPS20P32-201ENST00000456044 356 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPL7P32-201ENST00000457119 744 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 MTND2P28-201ENST00000457540 1044 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPL23AP2-201ENST00000471227 466 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RN7SL810P-201ENST00000493031 276 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL592156.1-201ENST00000508758 304 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 OR51K1P-201ENST00000510214 950 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 RN7SKP92-201ENST00000517266 244 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 IGLVIV-65-201ENST00000517313 360 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 OR8G5-201ENST00000524943 1041 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 RPL12P25-202ENST00000598100 674 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL021368.1-201ENST00000607490 540 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL355802.4-201ENST00000607635 548 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC019193.2-201ENST00000610012 634 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL359535.1-201ENST00000612100 1087 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL121873.1-201ENST00000616013 524 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL163152.1-201ENST00000642001 374 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS39Q96JC1 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC119744.1-201ENST00000454746 1715 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC016588.2-201ENST00000632484 3021 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AL132640.2-201ENST00000559968 1698 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 RNA5SP505-201ENST00000364748 108 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 SNORD51.1-201ENST00000365405 77 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS39Q96JC1 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS39Q96JC1 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 MIR585-201ENST00000384887 94 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 RPL37P18-201ENST00000411602 243 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 MTND4P24-201ENST00000424002 397 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 FAM204CP-201ENST00000424489 642 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AL157831.1-201ENST00000426134 473 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 ZFAND6P1-201ENST00000434138 605 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 ELOCP8-201ENST00000439309 332 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 ELOCP15-201ENST00000442090 332 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC069540.1-201ENST00000446320 988 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 HMGN2P21-201ENST00000447764 270 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC093663.2-201ENST00000484625 313 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC111000.3-201ENST00000508057 576 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 RNA5SP73-201ENST00000516744 108 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 RN7SKP277-201ENST00000516895 283 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 CDH12P4-201ENST00000517835 295 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 CDH12P3-201ENST00000517935 295 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 CDH12P1-201ENST00000518435 295 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 OR5AK3P-201ENST00000527486 1297 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC234771.5-201ENST00000600161 514 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC090948.1-201ENST00000607464 549 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AL162233.1-201ENST00000620014 944 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 MIR7703-201ENST00000620784 77 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms