Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SL188P-201ENST00000469842 285 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC092754.1-201ENST00000472975 479 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC116337.2-201ENST00000477662 156 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
USP39Q53GS9 OR5H5P-201ENST00000503164 928 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC098799.2-201ENST00000509466 868 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 Y_RNA.702-201ENST00000516843 96 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 OR5BC1P-201ENST00000529327 739 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 YWHABP2-201ENST00000540201 713 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC009063.1-201ENST00000563342 702 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 MIR4330-201ENST00000579077 105 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 C8orf59P2-201ENST00000603441 271 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC087283.1-201ENST00000604029 1074 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC005034.5-201ENST00000604219 466 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC007014.2-201ENST00000615581 479 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AL357080.1-201ENST00000617394 239 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC127502.3-201ENST00000636170 1206 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 RPS4XP5-202ENST00000449995 1334 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC079097.1-201ENST00000512187 1399 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC093671.1-201ENST00000624981 2929 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 SCARNA15-201ENST00000607520 4325 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 HSPA8P14-201ENST00000552265 1805 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 Z95331.1-201ENST00000623075 23112 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 MTCO1P18-201ENST00000455518 1419 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 CASC19-221ENST00000641309 1382 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 Y_RNA.61-201ENST00000362835 102 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 RNU6-549P-201ENST00000384433 107 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 Y_RNA.554-201ENST00000384672 102 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 GPS2P1-201ENST00000411761 986 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC016397.1-201ENST00000412463 242 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 HMGB3P31-201ENST00000413333 595 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 USP9YP6-201ENST00000413550 854 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 RPL26P29-201ENST00000415623 438 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AC245028.1-201ENST00000423259 256 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 USP9YP18-201ENST00000425912 695 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 RWDD4P2-201ENST00000426392 563 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 USP9YP9-201ENST00000429406 715 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 USP9YP31-201ENST00000431405 881 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 DNAJC19P4-201ENST00000440115 345 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC073465.2-201ENST00000440938 498 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 TCEA1P3-201ENST00000443005 880 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL353898.1-201ENST00000444055 238 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AC114755.5-201ENST00000447760 831 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 USP9YP34-201ENST00000453983 808 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 RPS20P4-201ENST00000461659 355 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 PSAT1P4-201ENST00000466500 526 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AC073358.1-201ENST00000505671 684 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 SNORA70.11-201ENST00000515987 138 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 SNORA70.13-201ENST00000516116 138 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 SNORA31.13-201ENST00000516624 135 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms