Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL109766.1-201ENST00000555080 552 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MTND4LP24-201ENST00000572277 291 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MIR4429-201ENST00000580105 73 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC093227.2-201ENST00000589357 285 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PCNAP1-202ENST00000595299 752 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC106052.1-201ENST00000608029 497 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AP000238.1-201ENST00000608759 426 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC097505.1-201ENST00000610199 565 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL353726.1-201ENST00000614041 1000 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC123767.1-202ENST00000620407 817 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 OR52H1-202ENST00000641796 1061 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL133412.1-201ENST00000380194 2992 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 IRF5P1-201ENST00000504852 2164 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MAPK10-263ENST00000641052 4307 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC138393.1-206ENST00000540997 1886 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC119744.1-201ENST00000454746 1715 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 SNURFL-201ENST00000309296 343 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 ANKRD36P1-201ENST00000344424 659 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 RNU6-525P-201ENST00000363685 104 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 RNA5SP515-201ENST00000364570 118 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LRRC37BP1-201ENST00000398851 714 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC025750.1-201ENST00000399891 379 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 RPS3AP23-201ENST00000401762 784 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 MTATP6P20-201ENST00000414147 562 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC069213.2-201ENST00000420238 366 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 CKS1BP6-201ENST00000424932 240 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 USP9YP24-201ENST00000434374 697 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 NMNAT1P2-201ENST00000435192 860 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC002542.1-201ENST00000440683 193 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 USP9YP17-201ENST00000444617 696 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 RN7SL443P-201ENST00000464331 290 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 RPL30P11-201ENST00000495304 339 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 HMGB1P21-201ENST00000502313 581 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 GTF2F2P1-201ENST00000511083 675 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 IGKV1-32-201ENST00000519290 311 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 COX6B1P6-201ENST00000522347 255 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC044913.1-201ENST00000557200 430 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 MIR4277-201ENST00000578298 84 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC067852.4-201ENST00000590314 478 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC006946.3-201ENST00000609791 756 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC009237.15-201ENST00000610252 501 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC087683.2-201ENST00000611384 326 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 AC023509.5-201ENST00000617434 807 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
PDLIM3Q53GG5 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 CASC19-206ENST00000641028 1430 ntBASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 NSRP1P1-201ENST00000444067 1693 ntBASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.04□□□□□ -1.76
PDLIM3Q53GG5 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms