Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008147.4-201ENST00000617570 1204 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 BX005214.3-202ENST00000619809 325 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AP000770.2-201ENST00000623694 100 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC006963.1-201ENST00000624003 1052 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC004777.1-201ENST00000624317 287 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC112200.1-201ENST00000625015 234 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC009452.1-201ENST00000640823 606 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 OR2L1P-202ENST00000641567 1023 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC010300.1-201ENST00000600671 5134 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 SGO1P1-201ENST00000603525 1447 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL121657.1-201ENST00000327215 531 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 RN7SKP280-201ENST00000364196 304 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL079342.2-201ENST00000403367 482 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL136310.1-201ENST00000404926 654 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 U3.32-201ENST00000408116 212 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 OR51B3P-201ENST00000412287 913 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 RPL21P108-201ENST00000413857 481 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 Z75741.2-201ENST00000417272 1167 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC008280.1-201ENST00000418851 412 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 BTF3P6-201ENST00000448054 499 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AL589880.1-201ENST00000448271 287 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 PRDX3P4-201ENST00000470828 747 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC015724.1-201ENST00000478577 156 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 TCP11X3P-202ENST00000514289 1254 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 RNU6-311P-201ENST00000516224 102 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC068831.4-201ENST00000556118 109 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 NDUFB4P11-201ENST00000560510 395 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 BPTFP1-201ENST00000579209 492 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC018695.5-201ENST00000605872 315 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 SNORD91B-202ENST00000608459 222 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 MIR8069-1-201ENST00000616627 86 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 MIR8069-2-201ENST00000621412 86 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 AC099786.3-201ENST00000565735 1410 ntBASIC4.62□□□□□ -1.67
COL28A1Q2UY09 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL28A1Q2UY09 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 USP9YP4-201ENST00000424401 1745 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 RNU4-22P-201ENST00000411058 166 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 RPS3AP37-201ENST00000419176 745 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 RPF2P1-201ENST00000424137 906 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 HMGB3P5-201ENST00000428894 612 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC016831.4-201ENST00000438302 307 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC073587.1-201ENST00000447093 876 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 NUTF2P3-201ENST00000448540 384 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC112492.1-201ENST00000449607 712 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC104689.1-201ENST00000473356 768 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 GAPDHP39-201ENST00000481866 979 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms