Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FCF1P3-201ENST00000496394 590 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC010460.1-201ENST00000507087 466 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA1P55317 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.53□□□□□ -1.84
FOXA1P55317 AP006245.1-201ENST00000522549 120 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC007991.1-201ENST00000522680 631 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA1P55317 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.53□□□□□ -1.84
FOXA1P55317 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.53□□□□□ -1.84
FOXA1P55317 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA1P55317 RN7SL703P-201ENST00000578485 302 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA1P55317 VN1R81P-201ENST00000602085 372 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC068831.8-201ENST00000620171 435 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA1P55317 AP000553.6-201ENST00000641242 118 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AL732372.2-225ENST00000642124 456 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 RLIMP2-201ENST00000427891 1563 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
FOXA1P55317 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
FOXA1P55317 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
FOXA1P55317 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 MTND4P10-201ENST00000446199 1363 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 AL136116.1-201ENST00000403591 381 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AL138878.1-201ENST00000405131 347 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AL603766.1-201ENST00000407763 664 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 SNORA57.3-201ENST00000411095 141 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 AMD1P2-201ENST00000412936 992 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AC127526.1-201ENST00000417526 366 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.52□□□□□ -1.85
FOXA1P55317 SDCBPP2-201ENST00000424643 885 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 OR6C71P-201ENST00000432580 913 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.52□□□□□ -1.85
FOXA1P55317 HSFY6P-201ENST00000445573 403 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 MRPS31P2-201ENST00000451581 518 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA1P55317 AP001960.1-201ENST00000506494 658 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 PCBP2P3-201ENST00000509726 843 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA1P55317 MTCO1P35-201ENST00000515270 228 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AC093853.1-201ENST00000515689 483 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA1P55317 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC092851.1-201ENST00000535964 478 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 CYCSP30-201ENST00000546447 172 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA1P55317 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.52□□□□□ -1.85
FOXA1P55317 CD24P2-201ENST00000565486 219 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA1P55317 AL354798.1-201ENST00000622505 329 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 MIR6715B-201ENST00000637172 77 ntBASIC3.52□□□□□ -1.85
FOXA1P55317 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA1P55317 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA1P55317 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
FOXA1P55317 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 RNA5SP235-201ENST00000365411 114 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 CYP4F29P-201ENST00000420685 446 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA1P55317 AC006989.1-201ENST00000427212 131 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA1P55317 VN1R105P-201ENST00000486595 910 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 RPL23AP73-201ENST00000492507 471 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AGGF1P3-201ENST00000493675 1213 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 HMGB3P14-201ENST00000494195 599 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 AC090819.1-201ENST00000523800 1111 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA1P55317 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
FOXA1P55317 AC025423.2-201ENST00000537570 439 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA1P55317 AC027281.1-201ENST00000574178 758 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AC115989.2-201ENST00000578640 563 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 AC244505.7-201ENST00000599675 272 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 Z82195.1-201ENST00000604558 398 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 AC115621.1-201ENST00000604653 858 ntBASIC3.51□□□□□ -1.85
FOXA1P55317 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 AL732618.1-201ENST00000623251 301 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms