Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NANOGP6-201ENST00000429190 847 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A4P53420 AC092641.1-201ENST00000440229 772 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 RPL5P24-201ENST00000463742 885 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 RPL5P23-201ENST00000496040 868 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 AC097462.2-201ENST00000504623 481 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 AC004069.2-201ENST00000505438 1114 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A4P53420 OR7E13P-201ENST00000526052 910 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL4A4P53420 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A4P53420 AC009712.1-201ENST00000564938 316 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
COL4A4P53420 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A4P53420 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
COL4A4P53420 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC3.98□□□□□ -1.77
COL4A4P53420 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A4P53420 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A4P53420 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 AC096644.3-201ENST00000416788 338 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.97□□□□□ -1.77
COL4A4P53420 RPL21P109-201ENST00000422213 475 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 SETP9-201ENST00000423837 832 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 YWHAEP5-201ENST00000431545 765 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 RPL21P11-201ENST00000461458 483 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 HMGB1P19-201ENST00000517578 577 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.97□□□□□ -1.77
COL4A4P53420 SULT1C2P2-201ENST00000562517 294 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AL133457.1-201ENST00000564251 987 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.97□□□□□ -1.77
COL4A4P53420 MRPS35P3-201ENST00000603189 709 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC133552.5-201ENST00000604266 540 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC090953.1-201ENST00000604305 1092 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC009237.17-201ENST00000618111 748 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL4A4P53420 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A4P53420 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A4P53420 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A4P53420 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A4P53420 MFSD8-236ENST00000641509 4050 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL4A4P53420 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 MTCO1P45-201ENST00000431457 267 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC069285.2-201ENST00000440210 275 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 RSL24D1P3-201ENST00000449255 495 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 RN7SL807P-201ENST00000470923 297 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 AC103843.2-201ENST00000530523 682 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A4P53420 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A4P53420 SNORA62.6-201ENST00000606322 83 ntBASIC3.97□□□□□ -1.77
COL4A4P53420 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
COL4A4P53420 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC3.96□□□□□ -1.78
COL4A4P53420 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 AC017007.4-201ENST00000503353 1352 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 AC123912.3-201ENST00000600907 1367 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 SNORA48.5-201ENST00000391143 135 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 JKAMPP1-201ENST00000413804 919 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 USP12PY-201ENST00000427677 1064 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A4P53420 BTF3P5-201ENST00000457252 467 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A4P53420 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A4P53420 HNRNPKP5-201ENST00000515300 253 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A4P53420 AC135507.2-201ENST00000612443 309 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 MIR4727-201ENST00000622232 55 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 AP000720.1-201ENST00000625091 483 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A4P53420 AC092435.3-201ENST00000565538 3654 ntBASIC3.96□□□□□ -1.78
COL4A4P53420 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A4P53420 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A4P53420 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms