Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CXCL12P48061 BX510359.1-201ENST00000456973 237 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.84□□□□□ -1.79
CXCL12P48061 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.84□□□□□ -1.79
CXCL12P48061 RPS29P2-201ENST00000479278 136 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 UBA52P3-201ENST00000491303 382 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 SNORA70.17-201ENST00000516449 133 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 AC008676.3-201ENST00000521237 435 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.84□□□□□ -1.79
CXCL12P48061 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.84□□□□□ -1.79
CXCL12P48061 DUX4L52-201ENST00000549363 777 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 RPL21P7-201ENST00000557463 483 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 SLC25A36P1-201ENST00000590111 465 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 AC010591.1-201ENST00000603941 649 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 AC138473.1-201ENST00000605717 526 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 AC015871.5-202ENST00000623252 701 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 MIR3651-201ENST00000630427 90 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 MARK2P15-201ENST00000432204 2186 ntBASIC3.84□□□□□ -1.79
CXCL12P48061 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
CXCL12P48061 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CXCL12P48061 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.84□□□□□ -1.8
CXCL12P48061 AC026523.2-201ENST00000625039 7739 ntBASIC3.84□□□□□ -1.8
CXCL12P48061 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.84□□□□□ -1.8
CXCL12P48061 AC093535.2-201ENST00000624769 2326 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CXCL12P48061 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CXCL12P48061 MIR199A2-201ENST00000385289 110 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.83□□□□□ -1.8
CXCL12P48061 OR4K6P-201ENST00000416478 897 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.83□□□□□ -1.8
CXCL12P48061 AC073063.1-201ENST00000434352 607 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.83□□□□□ -1.8
CXCL12P48061 RN7SL601P-201ENST00000471221 293 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 RN7SKP57-201ENST00000517248 293 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.83□□□□□ -1.8
CXCL12P48061 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.83□□□□□ -1.8
CXCL12P48061 TRAV11-201ENST00000539512 339 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.83□□□□□ -1.8
CXCL12P48061 AL354760.1-201ENST00000608357 643 ntBASIC3.83□□□□□ -1.8
CXCL12P48061 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CXCL12P48061 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CXCL12P48061 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CXCL12P48061 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CXCL12P48061 RLIMP2-201ENST00000427891 1563 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CXCL12P48061 Y_RNA.62-201ENST00000362840 99 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.82□□□□□ -1.8
CXCL12P48061 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.82□□□□□ -1.8
CXCL12P48061 HMGB1P37-201ENST00000439613 609 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC092641.1-201ENST00000440229 772 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 SNRPFP2-201ENST00000440710 251 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AL357520.1-201ENST00000441557 453 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC073387.1-201ENST00000453261 709 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 UBDP1-202ENST00000457888 382 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 RPL5P24-201ENST00000463742 885 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.82□□□□□ -1.8
CXCL12P48061 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CXCL12P48061 AC017015.1-201ENST00000477387 286 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC098799.1-201ENST00000504752 800 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC008694.2-201ENST00000517591 306 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 AC069240.1-201ENST00000548774 375 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC3.82□□□□□ -1.8
CXCL12P48061 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CXCL12P48061 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 AC009303.3-201ENST00000591103 736 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC020914.6-201ENST00000594327 272 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 RNU1-30P-201ENST00000606575 163 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.82□□□□□ -1.8
CXCL12P48061 BMS1P21-201ENST00000634565 365 ntBASIC3.82□□□□□ -1.8
CXCL12P48061 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CXCL12P48061 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.82□□□□□ -1.8
CXCL12P48061 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CXCL12P48061 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.82□□□□□ -1.8
CXCL12P48061 LINC01109-201ENST00000603837 3081 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CXCL12P48061 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 AL049781.1-201ENST00000623195 3585 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.81□□□□□ -1.8
CXCL12P48061 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
CXCL12P48061 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.81□□□□□ -1.8
CXCL12P48061 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 VN1R8P-201ENST00000407739 893 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 SEPT7P8-201ENST00000413308 775 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CXCL12P48061 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.81□□□□□ -1.8
CXCL12P48061 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.81□□□□□ -1.8
CXCL12P48061 RPS12P5-201ENST00000423449 371 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.81□□□□□ -1.8
CXCL12P48061 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.81□□□□□ -1.8
CXCL12P48061 AC073587.1-201ENST00000447093 876 ntBASIC3.81□□□□□ -1.8
CXCL12P48061 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms