Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.66□□□□□ -1.66
COL18A1P39060 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 VN1R51P-201ENST00000411675 945 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 UBE2V1P1-201ENST00000430836 445 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.66□□□□□ -1.66
COL18A1P39060 MTND6P5-201ENST00000448266 512 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.66□□□□□ -1.66
COL18A1P39060 HMGB1P21-201ENST00000502313 581 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 AC109458.1-201ENST00000508858 316 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 AC027281.1-201ENST00000574178 758 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 MRPS35P3-201ENST00000603189 709 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 AC124312.4-201ENST00000605533 310 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.66□□□□□ -1.66
COL18A1P39060 AC063952.1-203ENST00000634410 658 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.66□□□□□ -1.66
COL18A1P39060 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
COL18A1P39060 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
COL18A1P39060 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.66□□□□□ -1.66
COL18A1P39060 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL18A1P39060 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL18A1P39060 UBA52P6-201ENST00000399822 382 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.65□□□□□ -1.66
COL18A1P39060 AC096638.2-201ENST00000434965 711 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 AC073522.1-201ENST00000483312 377 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 RN7SL504P-201ENST00000494496 287 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 HMGB3P13-201ENST00000511263 607 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 AC011611.1-201ENST00000552179 197 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.65□□□□□ -1.66
COL18A1P39060 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.65□□□□□ -1.66
COL18A1P39060 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 AP003355.3-201ENST00000623465 114 ntBASIC4.65□□□□□ -1.66
COL18A1P39060 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
COL18A1P39060 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL18A1P39060 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL18A1P39060 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL18A1P39060 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
COL18A1P39060 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL18A1P39060 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL18A1P39060 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.65□□□□□ -1.67
COL18A1P39060 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.65□□□□□ -1.67
COL18A1P39060 KATNBL1P2-201ENST00000433311 835 ntBASIC4.65□□□□□ -1.67
COL18A1P39060 ATP5HP2-201ENST00000433885 485 ntBASIC4.65□□□□□ -1.67
COL18A1P39060 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.65□□□□□ -1.67
COL18A1P39060 KLKP1-201ENST00000595979 403 ntBASIC4.65□□□□□ -1.67
COL18A1P39060 OR7M1P-201ENST00000608946 533 ntBASIC4.65□□□□□ -1.67
COL18A1P39060 MIR7851-201ENST00000610611 160 ntBASIC4.65□□□□□ -1.67
COL18A1P39060 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
COL18A1P39060 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.65□□□□□ -1.67
COL18A1P39060 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL18A1P39060 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.65□□□□□ -1.67
COL18A1P39060 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.64□□□□□ -1.67
COL18A1P39060 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.64□□□□□ -1.67
COL18A1P39060 AL645937.1-201ENST00000641739 1652 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
COL18A1P39060 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
COL18A1P39060 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.64□□□□□ -1.67
COL18A1P39060 RPS4XP2-201ENST00000458402 793 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 AC080014.1-201ENST00000496877 1201 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.64□□□□□ -1.67
COL18A1P39060 MIR4672-201ENST00000583126 81 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 AL163642.2-201ENST00000604722 1019 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 AC138932.5-201ENST00000617759 563 ntBASIC4.64□□□□□ -1.67
COL18A1P39060 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.64□□□□□ -1.67
COL18A1P39060 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL18A1P39060 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL18A1P39060 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 SNORA38.1-201ENST00000364172 131 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 S100A11P2-201ENST00000467589 312 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC109925.1-201ENST00000478069 331 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.63□□□□□ -1.67
COL18A1P39060 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC116312.1-201ENST00000606841 314 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC084036.1-201ENST00000609190 508 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC007656.2-201ENST00000624902 4547 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL18A1P39060 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms