Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
BDNFP23560 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
BDNFP23560 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
BDNFP23560 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
BDNFP23560 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
BDNFP23560 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
BDNFP23560 ZNF734P-201ENST00000419494 1534 ntBASIC4.92□□□□□ -1.62
BDNFP23560 MTND5P31-201ENST00000419366 1374 ntBASIC4.92□□□□□ -1.62
BDNFP23560 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BDNFP23560 ZNF137P-201ENST00000456718 1920 ntBASIC4.92□□□□□ -1.62
BDNFP23560 CASC19-206ENST00000641028 1430 ntBASIC4.92□□□□□ -1.62
BDNFP23560 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
BDNFP23560 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
BDNFP23560 UBBP2-201ENST00000376781 231 ntBASIC4.92□□□□□ -1.62
BDNFP23560 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BDNFP23560 RNU6-207P-201ENST00000384137 107 ntBASIC4.92□□□□□ -1.62
BDNFP23560 RNU6-441P-201ENST00000384545 106 ntBASIC4.92□□□□□ -1.62
BDNFP23560 MIR3074-201ENST00000384885 81 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AP000580.1-201ENST00000404439 358 ntBASIC4.92□□□□□ -1.62
BDNFP23560 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
BDNFP23560 MTATP6P19-201ENST00000413797 659 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 CKS1BP6-201ENST00000424932 240 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC068287.1-201ENST00000430283 295 ntBASIC4.92□□□□□ -1.62
BDNFP23560 RHEBP2-201ENST00000450289 600 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC009220.1-201ENST00000451614 275 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 AC112206.1-201ENST00000468416 477 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC025164.1-201ENST00000496249 478 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 AC002456.2-201ENST00000509356 380 ntBASIC4.92□□□□□ -1.62
BDNFP23560 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 RNU2-58P-201ENST00000516403 183 ntBASIC4.92□□□□□ -1.62
BDNFP23560 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 OR4A45P-201ENST00000529954 901 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AP001781.1-201ENST00000530977 207 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.92□□□□□ -1.62
BDNFP23560 LSM6P2-201ENST00000552208 177 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.92□□□□□ -1.62
BDNFP23560 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.92□□□□□ -1.62
BDNFP23560 AGGF1P8-201ENST00000562979 1000 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 AC010928.3-201ENST00000587712 541 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AL513477.2-201ENST00000607858 568 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC013468.1-201ENST00000608680 598 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC078899.5-201ENST00000612475 178 ntBASIC4.92□□□□□ -1.62
BDNFP23560 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AC124312.6-202ENST00000623624 418 ntBASIC4.92□□□□□ -1.62
BDNFP23560 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
BDNFP23560 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
BDNFP23560 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BDNFP23560 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
BDNFP23560 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
BDNFP23560 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
BDNFP23560 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 AC108467.2-201ENST00000617640 1597 ntBASIC4.91□□□□□ -1.62
BDNFP23560 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
BDNFP23560 SNORA71.2-201ENST00000364941 134 ntBASIC4.91□□□□□ -1.62
BDNFP23560 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
BDNFP23560 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.91□□□□□ -1.62
BDNFP23560 DNAJC19P7-201ENST00000428811 344 ntBASIC4.91□□□□□ -1.62
BDNFP23560 RPL23AP1-201ENST00000428990 471 ntBASIC4.91□□□□□ -1.62
BDNFP23560 RPL21P112-201ENST00000434403 463 ntBASIC4.91□□□□□ -1.62
BDNFP23560 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
BDNFP23560 GTF3AP5-201ENST00000442645 697 ntBASIC4.91□□□□□ -1.62
BDNFP23560 snoU13.1-201ENST00000459157 104 ntBASIC4.91□□□□□ -1.62
BDNFP23560 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 RNA5SP309-201ENST00000516670 106 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.91□□□□□ -1.62
BDNFP23560 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 AC006518.2-201ENST00000542513 940 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AC092470.1-201ENST00000546187 132 ntBASIC4.91□□□□□ -1.62
BDNFP23560 GSTP1P1-201ENST00000548078 319 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.91□□□□□ -1.62
BDNFP23560 AP001542.2-201ENST00000593141 364 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AL133338.2-201ENST00000604292 736 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AL139286.1-201ENST00000604465 483 ntBASIC4.91□□□□□ -1.62
BDNFP23560 AC026368.1-201ENST00000614934 690 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms