Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC013356.1-201ENST00000489027 564 ntBASIC4.38□□□□□ -1.71
MSH3P20585 RN7SL812P-201ENST00000493791 279 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.38□□□□□ -1.71
MSH3P20585 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.38□□□□□ -1.71
MSH3P20585 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.38□□□□□ -1.71
MSH3P20585 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.38□□□□□ -1.71
MSH3P20585 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.38□□□□□ -1.71
MSH3P20585 OR8I1P-201ENST00000529291 931 ntBASIC4.38□□□□□ -1.71
MSH3P20585 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.38□□□□□ -1.71
MSH3P20585 AC008083.2-201ENST00000546707 476 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.38□□□□□ -1.71
MSH3P20585 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.38□□□□□ -1.71
MSH3P20585 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.38□□□□□ -1.71
MSH3P20585 AC068714.1-201ENST00000559623 800 ntBASIC4.38□□□□□ -1.71
MSH3P20585 MTND6P33-201ENST00000571794 183 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AL121834.1-201ENST00000572284 509 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.38□□□□□ -1.71
MSH3P20585 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.38□□□□□ -1.71
MSH3P20585 AC068790.4-201ENST00000602474 263 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AL365400.2-201ENST00000605604 902 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC090948.1-201ENST00000607464 549 ntBASIC4.38□□□□□ -1.71
MSH3P20585 MIR7154-201ENST00000620673 73 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC104985.3-201ENST00000623479 597 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC007546.2-201ENST00000623996 360 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 AC010329.2-201ENST00000595195 2737 ntBASIC4.38□□□□□ -1.71
MSH3P20585 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
MSH3P20585 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.37□□□□□ -1.71
MSH3P20585 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 RNA5SP307-201ENST00000362863 116 ntBASIC4.37□□□□□ -1.71
MSH3P20585 RNU6-236P-201ENST00000363886 106 ntBASIC4.37□□□□□ -1.71
MSH3P20585 RNU1-130P-201ENST00000363930 160 ntBASIC4.37□□□□□ -1.71
MSH3P20585 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.37□□□□□ -1.71
MSH3P20585 MIR3065-201ENST00000390137 79 ntBASIC4.37□□□□□ -1.71
MSH3P20585 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
MSH3P20585 SNORD65C-201ENST00000390962 71 ntBASIC4.37□□□□□ -1.71
MSH3P20585 RPL23AP59-201ENST00000399415 461 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC092638.1-201ENST00000411966 1275 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 GAPDHP49-201ENST00000421421 961 ntBASIC4.37□□□□□ -1.71
MSH3P20585 RPS27AP7-201ENST00000422792 455 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 SKP1P3-201ENST00000429280 487 ntBASIC4.37□□□□□ -1.71
MSH3P20585 CDY14P-201ENST00000431260 1014 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AL035246.1-201ENST00000433554 1255 ntBASIC4.37□□□□□ -1.71
MSH3P20585 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.37□□□□□ -1.71
MSH3P20585 CDY12P-201ENST00000440679 1015 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AL353093.1-201ENST00000441292 436 ntBASIC4.37□□□□□ -1.71
MSH3P20585 OR10R1P-201ENST00000441524 1141 ntBASIC4.37□□□□□ -1.71
MSH3P20585 ELOCP13-201ENST00000443934 329 ntBASIC4.37□□□□□ -1.71
MSH3P20585 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 CDY13P-201ENST00000445813 1015 ntBASIC4.37□□□□□ -1.71
MSH3P20585 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.37□□□□□ -1.71
MSH3P20585 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.37□□□□□ -1.71
MSH3P20585 CDY23P-201ENST00000451661 1014 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AL354710.1-201ENST00000453641 246 ntBASIC4.37□□□□□ -1.71
MSH3P20585 METTL15P1-201ENST00000481421 1045 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC020699.1-201ENST00000505161 445 ntBASIC4.37□□□□□ -1.71
MSH3P20585 HMGB3P13-201ENST00000511263 607 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC093752.1-206ENST00000511823 336 ntBASIC4.37□□□□□ -1.71
MSH3P20585 OR8K4P-201ENST00000534608 872 ntBASIC4.37□□□□□ -1.71
MSH3P20585 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.37□□□□□ -1.71
MSH3P20585 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 AC090312.1-201ENST00000580637 348 ntBASIC4.37□□□□□ -1.71
MSH3P20585 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
MSH3P20585 AC005191.1-201ENST00000603950 358 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC008745.1-201ENST00000604064 271 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AL160290.3-201ENST00000604869 165 ntBASIC4.37□□□□□ -1.71
MSH3P20585 Z98200.1-201ENST00000607298 470 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC096586.1-201ENST00000610267 561 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC023509.5-201ENST00000617434 807 ntBASIC4.37□□□□□ -1.71
MSH3P20585 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.37□□□□□ -1.71
MSH3P20585 AC006963.1-201ENST00000624003 1052 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC067931.1-201ENST00000624190 671 ntBASIC4.37□□□□□ -1.71
MSH3P20585 AC139713.2-214ENST00000642059 1811 ntBASIC4.37□□□□□ -1.71
MSH3P20585 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
MSH3P20585 AL445437.1-201ENST00000623157 3087 ntBASIC4.37□□□□□ -1.71
MSH3P20585 KPNA2P2-201ENST00000419546 1489 ntBASIC4.37□□□□□ -1.71
MSH3P20585 ASNSP1-201ENST00000518311 1939 ntBASIC4.36□□□□□ -1.71
MSH3P20585 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSH3P20585 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSH3P20585 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSH3P20585 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.36□□□□□ -1.71
MSH3P20585 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
MSH3P20585 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSH3P20585 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.36□□□□□ -1.71
MSH3P20585 OR5P1P-201ENST00000299512 925 ntBASIC4.36□□□□□ -1.71
MSH3P20585 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
MSH3P20585 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
MSH3P20585 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
MSH3P20585 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSH3P20585 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms