Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SDC1P18827 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC1P18827 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
SDC1P18827 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC1P18827 MIR16-2-201ENST00000362117 81 ntBASIC3.87□□□□□ -1.79
SDC1P18827 RPS4XP9-201ENST00000405151 780 ntBASIC3.87□□□□□ -1.79
SDC1P18827 ATF1P1-201ENST00000406040 927 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AL445183.3-201ENST00000414168 502 ntBASIC3.87□□□□□ -1.79
SDC1P18827 TRGV6-201ENST00000417928 299 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.87□□□□□ -1.79
SDC1P18827 MTCO2P1-201ENST00000424648 477 ntBASIC3.87□□□□□ -1.79
SDC1P18827 RPS24P8-201ENST00000431490 402 ntBASIC3.87□□□□□ -1.79
SDC1P18827 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 AL031663.1-201ENST00000437445 219 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AL357520.1-201ENST00000441557 453 ntBASIC3.87□□□□□ -1.79
SDC1P18827 MTND2P8-201ENST00000450555 1025 ntBASIC3.87□□□□□ -1.79
SDC1P18827 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 RPL7P1-201ENST00000468161 747 ntBASIC3.87□□□□□ -1.79
SDC1P18827 RPL7P9-201ENST00000468715 747 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 RWDD4P1-201ENST00000488019 565 ntBASIC3.87□□□□□ -1.79
SDC1P18827 MTCO2P9-201ENST00000503214 694 ntBASIC3.87□□□□□ -1.79
SDC1P18827 HPRT1P2-201ENST00000505250 544 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 AC113192.3-201ENST00000529152 742 ntBASIC3.87□□□□□ -1.79
SDC1P18827 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC1P18827 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.87□□□□□ -1.79
SDC1P18827 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC1P18827 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 AC098483.2-201ENST00000603158 454 ntBASIC3.87□□□□□ -1.79
SDC1P18827 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC1P18827 BMS1P21-201ENST00000634565 365 ntBASIC3.87□□□□□ -1.79
SDC1P18827 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SDC1P18827 AC008432.1-201ENST00000615912 1320 ntBASIC3.87□□□□□ -1.79
SDC1P18827 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SDC1P18827 LARP1BP1-201ENST00000506036 1359 ntBASIC3.87□□□□□ -1.79
SDC1P18827 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.87□□□□□ -1.79
SDC1P18827 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC1P18827 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
SDC1P18827 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.86□□□□□ -1.79
SDC1P18827 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 FAM3C2-201ENST00000312214 681 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC011155.1-201ENST00000316512 456 ntBASIC3.86□□□□□ -1.79
SDC1P18827 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SDC1P18827 MIR383-201ENST00000362257 73 ntBASIC3.86□□□□□ -1.79
SDC1P18827 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SDC1P18827 HSPD1P16-201ENST00000402302 394 ntBASIC3.86□□□□□ -1.79
SDC1P18827 HMGB3P18-201ENST00000406327 590 ntBASIC3.86□□□□□ -1.79
SDC1P18827 RPL23AP26-201ENST00000412728 464 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 CHIAP3-201ENST00000423668 1133 ntBASIC3.86□□□□□ -1.79
SDC1P18827 UBE2V1P6-201ENST00000430840 422 ntBASIC3.86□□□□□ -1.79
SDC1P18827 RPS4XP4-201ENST00000443195 763 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC092685.1-201ENST00000447960 1243 ntBASIC3.86□□□□□ -1.79
SDC1P18827 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC1P18827 CYCSP20-201ENST00000473154 315 ntBASIC3.86□□□□□ -1.79
SDC1P18827 RN7SL604P-201ENST00000492589 296 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC111193.1-201ENST00000504097 155 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC106806.2-201ENST00000509365 500 ntBASIC3.86□□□□□ -1.79
SDC1P18827 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.86□□□□□ -1.79
SDC1P18827 CR383656.14-201ENST00000551951 406 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.86□□□□□ -1.79
SDC1P18827 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC1P18827 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 AC025946.2-201ENST00000603398 234 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC084824.5-201ENST00000612009 413 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC114781.5-201ENST00000615297 108 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC073342.3-201ENST00000624211 193 ntBASIC3.86□□□□□ -1.79
SDC1P18827 AC011944.2-201ENST00000624440 683 ntBASIC3.86□□□□□ -1.79
SDC1P18827 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.86□□□□□ -1.79
SDC1P18827 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
SDC1P18827 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC1P18827 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
SDC1P18827 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC1P18827 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.85□□□□□ -1.79
SDC1P18827 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 RNU6-481P-201ENST00000384194 107 ntBASIC3.85□□□□□ -1.79
SDC1P18827 HMGB3P31-201ENST00000413333 595 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RPL26P29-201ENST00000415623 438 ntBASIC3.85□□□□□ -1.79
SDC1P18827 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.85□□□□□ -1.79
SDC1P18827 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms