Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC089984.3-201ENST00000552838 363 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC10.84□□□□□ -0.67
MSH5O43196 FAM106CP-201ENST00000582212 507 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AC017100.2-201ENST00000584628 355 ntBASIC10.84□□□□□ -0.67
MSH5O43196 DTNA-220ENST00000590831 847 ntTSL 2 BASIC10.84□□□□□ -0.67
MSH5O43196 RPL23AP88-201ENST00000605759 454 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AC069294.1-201ENST00000608397 350 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AC068831.7-201ENST00000616954 363 ntBASIC10.84□□□□□ -0.67
MSH5O43196 Metazoa_SRP.115-201ENST00000619303 284 ntBASIC10.84□□□□□ -0.67
MSH5O43196 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC10.84□□□□□ -0.67
MSH5O43196 GTF2H2-201ENST00000274400 4336 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
MSH5O43196 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC10.84□□□□□ -0.67
MSH5O43196 AC036108.4-201ENST00000611654 2516 ntBASIC10.84□□□□□ -0.67
MSH5O43196 SLC9B2-201ENST00000362026 2300 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC10.83□□□□□ -0.67
MSH5O43196 SLC33A1-202ENST00000392845 9217 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 ZNF615-208ENST00000598071 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 ZNF204P-201ENST00000416749 2397 ntBASIC10.83□□□□□ -0.68
MSH5O43196 GEMIN6-201ENST00000281950 3728 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 APH1B-201ENST00000261879 4189 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 CREM-217ENST00000439705 2306 ntTSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 ABCB1-211ENST00000622132 4778 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 RNU1-85P-201ENST00000364127 164 ntBASIC10.83□□□□□ -0.68
MSH5O43196 RNA5SP105-201ENST00000391123 113 ntBASIC10.83□□□□□ -0.68
MSH5O43196 U3.29-201ENST00000391296 212 ntBASIC10.83□□□□□ -0.68
MSH5O43196 CCDC134-202ENST00000402061 525 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 AL137784.1-201ENST00000407121 745 ntBASIC10.83□□□□□ -0.68
MSH5O43196 RN7SKP108-201ENST00000411367 328 ntBASIC10.83□□□□□ -0.68
MSH5O43196 CFL1P1-202ENST00000432948 411 ntBASIC10.83□□□□□ -0.68
MSH5O43196 LINC00385-201ENST00000435044 374 ntTSL 3 BASIC10.83□□□□□ -0.68
MSH5O43196 WBP1LP7-201ENST00000437905 363 ntBASIC10.83□□□□□ -0.68
MSH5O43196 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 GNGT2-203ENST00000507680 585 ntAPPRIS P1 TSL 4 BASIC10.83□□□□□ -0.68
MSH5O43196 RN7SKP164-201ENST00000516138 266 ntBASIC10.83□□□□□ -0.68
MSH5O43196 IGHVIII-67-3-201ENST00000517650 232 ntBASIC10.83□□□□□ -0.68
MSH5O43196 AC092470.1-201ENST00000546187 132 ntBASIC10.83□□□□□ -0.68
MSH5O43196 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 AP001120.4-201ENST00000590231 108 ntBASIC10.83□□□□□ -0.68
MSH5O43196 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 MR1-205ENST00000434571 7479 ntTSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 LRRC37A6P-202ENST00000448648 5444 ntBASIC10.83□□□□□ -0.68
MSH5O43196 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC10.83□□□□□ -0.68
MSH5O43196 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC10.83□□□□□ -0.68
MSH5O43196 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
MSH5O43196 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC10.83□□□□□ -0.68
MSH5O43196 AC008985.1-201ENST00000624169 2239 ntBASIC10.82□□□□□ -0.68
MSH5O43196 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 CASR-201ENST00000490131 4015 ntTSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 RNU6-1175P-201ENST00000365200 107 ntBASIC10.82□□□□□ -0.68
MSH5O43196 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 RNU6-921P-201ENST00000384361 107 ntBASIC10.82□□□□□ -0.68
MSH5O43196 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
MSH5O43196 HSPE1P8-201ENST00000406997 288 ntBASIC10.82□□□□□ -0.68
MSH5O43196 AL591896.1-201ENST00000420211 491 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 AL158147.1-201ENST00000443970 75 ntBASIC10.82□□□□□ -0.68
MSH5O43196 LINC00265-202ENST00000448955 468 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 AL592464.2-201ENST00000457440 607 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 RPL23AP71-201ENST00000470966 469 ntBASIC10.82□□□□□ -0.68
MSH5O43196 RN7SL333P-201ENST00000476398 297 ntBASIC10.82□□□□□ -0.68
MSH5O43196 RPS4XP13-201ENST00000483219 789 ntBASIC10.82□□□□□ -0.68
MSH5O43196 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 AC103855.4-201ENST00000533158 265 ntBASIC10.82□□□□□ -0.68
MSH5O43196 RN7SL376P-201ENST00000578594 264 ntBASIC10.82□□□□□ -0.68
MSH5O43196 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC10.82□□□□□ -0.68
MSH5O43196 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
MSH5O43196 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 SH3D19-202ENST00000409252 4888 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 BHLHB9-202ENST00000372735 5130 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 AL096816.1-201ENST00000623300 2920 ntBASIC10.82□□□□□ -0.68
MSH5O43196 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
MSH5O43196 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC10.82□□□□□ -0.68
MSH5O43196 PAH-201ENST00000307000 2466 ntTSL 5 BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 743.2 ms