Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 Z92846.1-201ENST00000456203 268 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 CCDC75P1-201ENST00000469247 791 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC022795.1-201ENST00000473808 480 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 VPS26AP1-201ENST00000483197 979 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC234771.5-201ENST00000600161 514 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC233280.2-201ENST00000603917 1070 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC079248.2-201ENST00000623779 326 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 ATE1-AS1-202ENST00000636460 506 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 CASC19-204ENST00000641001 2055 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 SGO1P2-201ENST00000429458 1589 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 ECM1P2-201ENST00000503354 1577 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 THAP12P4-201ENST00000528321 2266 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL078599.1-201ENST00000402075 293 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 MIR1302-8-201ENST00000408342 128 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC011233.1-201ENST00000422812 283 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL593851.1-201ENST00000426171 157 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC073069.1-201ENST00000428657 441 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC004980.3-201ENST00000447046 365 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 MTCO2P25-201ENST00000447065 681 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 RFC5P1-201ENST00000454419 874 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC005229.2-201ENST00000456995 399 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 TPTE2P5-203ENST00000458118 728 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 RPL23AP71-201ENST00000470966 469 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 RPL7P16-201ENST00000479738 738 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC008897.1-201ENST00000494006 347 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 OR5H4P-201ENST00000510851 923 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 TOMM20P2-201ENST00000540082 421 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 MIR4270-201ENST00000581799 70 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 NTAN1P1-201ENST00000603150 646 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC106791.2-201ENST00000604680 391 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC096553.1-201ENST00000605169 829 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC093799.2-201ENST00000610062 578 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL353726.1-201ENST00000614041 1000 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC139792.2-201ENST00000624218 587 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL596275.2-204ENST00000641628 552 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AL596275.2-206ENST00000641957 626 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 AC021755.1-201ENST00000559747 1447 ntBASIC4.86□□□□□ -1.63
VPS4AQ9UN37 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS4AQ9UN37 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 159.2 ms