Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AP001429.1-201ENST00000602568 530 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC009220.3-201ENST00000604318 586 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RN7SL544P-201ENST00000617232 284 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RN7SL763P-201ENST00000620922 284 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC007792.1-201ENST00000623023 402 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC129915.3-201ENST00000634128 948 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 MFSD8-245ENST00000641743 948 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 PABPC1P9-201ENST00000426076 1612 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC068870.3-201ENST00000625077 2536 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL022578.1-201ENST00000439330 1433 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RNU6-534P-201ENST00000364877 106 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 Y_RNA.394-201ENST00000383942 103 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC093719.1-202ENST00000392735 373 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RPL10P10-201ENST00000403509 664 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RN7SKP240-201ENST00000410583 375 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RNU2-18P-201ENST00000411224 162 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RPS6P23-201ENST00000413224 722 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC104843.2-201ENST00000427666 297 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 DSTNP5-201ENST00000427921 523 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL512649.1-201ENST00000428997 581 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL450263.2-201ENST00000439400 589 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 HLA-DPA3-207ENST00000454398 229 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 PNPLA4P1-201ENST00000458328 305 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC011476.1-201ENST00000466725 307 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 OR52A4P-201ENST00000472867 958 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RPL7P24-201ENST00000493052 752 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC018710.1-201ENST00000506509 158 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 ATP1B1P1-201ENST00000509767 915 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 GTF2IP22-201ENST00000554443 182 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC004825.1-201ENST00000555068 586 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 MIR4311-201ENST00000580794 100 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC011373.1-201ENST00000607270 237 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 MESTIT1_2.1-201ENST00000616328 235 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC018816.2-201ENST00000621460 353 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AL160413.1-201ENST00000622780 310 ntBASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC39Q9UFE4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PWAR1-201ENST00000624188 2414 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MIR375-201ENST00000362103 64 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNU4-79P-201ENST00000362764 141 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNA5SP326-201ENST00000363209 110 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNU6-1090P-201ENST00000364065 94 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNA5SP30-201ENST00000365552 115 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNU6-549P-201ENST00000384433 107 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 Y_RNA.573-201ENST00000384763 105 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 GSTA12P-201ENST00000402398 508 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL356776.1-201ENST00000406574 447 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 RNA5SP80-201ENST00000410475 111 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC068533.2-201ENST00000411872 306 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MTCO3P12-201ENST00000416718 547 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 NENFP1-201ENST00000419476 466 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 GTF2IP23-201ENST00000423746 351 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 OR5AW1P-201ENST00000426334 1006 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms