Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC074029.1-201ENST00000552531 1044 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 H3F3BP2-201ENST00000583907 357 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 BNIP3P23-201ENST00000599655 511 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL139089.1-201ENST00000620372 975 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC068137.3-201ENST00000639191 341 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC073869.6-201ENST00000640656 341 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 DCAF13P1-201ENST00000495256 1330 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 OR9G4-201ENST00000302957 984 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 RNU1-146P-201ENST00000364015 165 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 RN7SKP124-201ENST00000364730 341 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 RNU4-2-201ENST00000365668 141 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 MIR551A-201ENST00000385042 96 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC005042.1-201ENST00000393397 800 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 OR8V1P-201ENST00000395193 873 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL121972.1-201ENST00000402023 252 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 MTND1P4-201ENST00000435196 415 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC091862.1-201ENST00000438016 1100 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 RPL7P31-201ENST00000450192 724 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC104763.1-201ENST00000475274 360 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC017015.1-201ENST00000477387 286 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ATP5LP5-201ENST00000483050 299 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 RPL7P24-201ENST00000493052 752 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 OR5G4P-201ENST00000525251 760 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 CR383656.6-201ENST00000550518 394 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 HSPE1P3-201ENST00000559254 309 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC015720.2-201ENST00000567709 334 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC009852.2-201ENST00000567898 485 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 MIR548AB-201ENST00000584917 84 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC006363.1-201ENST00000603806 463 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 HSPE1P14-201ENST00000605812 302 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC108747.1-201ENST00000609508 535 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 MIR6862-1-201ENST00000613016 70 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 MIR6862-2-201ENST00000614755 70 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC025574.2-201ENST00000615621 514 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC068722.2-201ENST00000618734 544 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AL355480.1-201ENST00000629041 99 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 AC093591.3-201ENST00000634516 308 ntBASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM39Q9HCM9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 228.5 ms