Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RNU6-347P-201ENST00000516658 105 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC083923.1-201ENST00000523708 376 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC011611.5-201ENST00000552477 578 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC090515.3-201ENST00000560431 315 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC023825.1-201ENST00000566704 1030 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 ATP5F1P7-201ENST00000567330 760 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RNF138P2-201ENST00000603490 592 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AL158050.2-201ENST00000605336 568 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC018754.1-201ENST00000607486 925 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 uc_338.13-201ENST00000618243 179 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC022106.2-201ENST00000620114 757 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AL356118.1-201ENST00000635272 1078 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 U6.107-201ENST00000637108 79 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 EIF2AP4-201ENST00000424793 1781 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 PHKBP1-201ENST00000450951 1951 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 NSRP1P1-201ENST00000444067 1693 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 MIR383-201ENST00000362257 73 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 MIR331-201ENST00000362302 94 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 RNU6-236P-201ENST00000363886 106 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 UBBP2-201ENST00000376781 231 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 RNU6-317P-201ENST00000384031 107 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 RSL24D1P1-201ENST00000404972 493 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 RPL34P6-201ENST00000432390 345 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC122718.1-201ENST00000439448 744 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC000041.1-201ENST00000439655 175 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 SEPT14P24-201ENST00000447236 180 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 FAM133DP-201ENST00000464802 691 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC108751.2-201ENST00000469993 231 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 METTL15P1-201ENST00000481421 1045 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 HMGB1P38-201ENST00000490557 577 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 UBA52P3-201ENST00000491303 382 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC108475.1-201ENST00000507880 950 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC010285.3-201ENST00000511668 676 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 MTND1P6-201ENST00000523621 946 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 BPIFA4P-203ENST00000603168 689 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC023762.1-201ENST00000603280 584 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC112503.1-201ENST00000608436 391 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 AL161637.1-201ENST00000622380 412 ntBASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC3Q9BQI4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 RNU1-94P-201ENST00000362627 173 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 SNORA37-201ENST00000384504 129 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 MIR122-201ENST00000385044 85 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 ATP5F1P2-201ENST00000398143 760 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms